KEGG   Trifolium pratense (red clover): 123906900
Entry
123906900         CDS       T08949                                 
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03010  Ribosome
tpra04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    123906900
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    123906900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:tpra03011]
    123906900
   04121 Ubiquitin system [BR:tpra04121]
    123906900
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tpra04147]
    123906900
Ribosome [BR:tpra03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    123906900
  Archaea
    123906900
Ubiquitin system [BR:tpra04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   123906900
Exosome [BR:tpra04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   123906900
  Exosomal proteins of colorectal cancer cells
   123906900
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 Plexin_RBD Dsc3_N Ubiquitin_5 TBK1_ULD UBL_UBAC1 DUF2604 OTU1_UBXL Fer2_3 Thioredox_PDIA6_C
Other DBs
NCBI-GeneID: 123906900
NCBI-ProteinID: XP_045812873
LinkDB
Position
LG2:20284727..20285429
AA seq 155 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKADA
NT seq 468 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtcaaaaccctaacgggtaagacgataaccctcgaggttgaatcttct
gacaccatcgacaacgtcaaggccaaaatccaagacaaggaaggaattccaccggatcaa
caacgactcatcttcgccggaaaacagctcgaagacggtcgcactctcgccgactacaac
atccagaaagagtccaccctccaccttgtgctccgtctccgtggtggtgctaagaagcgt
aagaagaagacttacactaagccaaagaagattaagcataagcataggaaggttaagctt
gcggttcttcagttttataaggttgatgattctgggaaggttcagagattgaggaaggag
tgtcctaatgctgaatgtggtgctggaactttcatggctaatcattttgatcgtcattat
tgtggcaagtgtggtttgacctatgtttatcagaaagctgatgcttaa

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