Trifolium pratense (red clover): 123907258
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Entry
123907258 CDS
T08949
Name
(RefSeq) probable E3 ubiquitin ligase SUD1 isoform X1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123907258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpra04121
]
123907258
Enzymes [BR:
tpra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123907258
Ubiquitin system [BR:
tpra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
123907258
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
zf-RING_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
123907258
NCBI-ProteinID:
XP_045813407
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Position
LG2:39151902..39159080
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AA seq
1113 aa
AA seq
DB search
MEIAHEPPPSLDGTPIPANTLANSPSSSYPSSSASSPRLSKGKEIIETSTSTAPPPSARY
DDDDEDEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHP
FSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLA
FVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDA
DREDEVDRNGARIARRPAGQANRNVNGDANGEDAGGAQGVAGAGQVIRRNAENVAARWEM
QAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIF
VPFSLGRIILHYLSWFFSTGSGPVLSVVPPTDTSLSLANITLKNALTAVQNISTDTQESG
SIGQIAEMLKVNASDLSEMSNNISASVSTDLLNGGSIGTSRISDVTTLAIGYIFILTLIF
CYFGVVALIRYTKGEPLTTGRFYGIASIAETIPSLFRQFLAAMRHLMTMVKVAFLLVIEL
GVFPLMCGWWLDVCTIQMFGKTMAHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLR
GVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAM
RMAPSIFPLEILLSDPFTEIPANMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALG
LTDFLLPSPDDNGNQENGNGERGRQERLQIAQAGVHDQGIVPFAGDDLNRVTNADAGEDY
DNDEQSDSDSYAFVLRIVLLLVIAWMTLLIFNSALVVVPISLGRILFNSIPRLPITHGIK
CNDLYAFIIGSYVIWTAVAGVRYSIEQVRKRRTSVLLNQIWKWCSIVVKSSALLSIWIFV
IPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLMDESW
RVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGMFPALGYPLVVNSAV
YRFAWLGCLSFSFVCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEHVEKANEAATST
GVQDTILLDSNLNQQDRDADVGLRLRHINQQAG
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgctcacgaaccaccgccttctctcgacggaacccctatccctgccaatacc
ctcgccaactctccctcttcttcttatccatcctcttccgcttcgtctcctcgtctttcc
aagggaaaggagatcatcgaaacctccacatcgacggcgccgccgccatctgcaaggtac
gacgatgatgacgaagatgaagaagatgtttgccgaatatgccggaaccctggtgacgct
gataatcctcttcggtatccgtgtgcctgtagcggtagtatcaaatttgtgcatcaagat
tgtctccttcagtggcttaatcatagcaacgctcgtcaatgcgaggtctgcaagcatcca
ttctccttctctcctgtttatgcagagaatgcacctgctaggttgccttttcaagagttt
gtggttggaatggcgatgaaagcttgccatgtcttgcaattctttttgcgtctgagtttt
gtgctatctgtgtggctcttgattatacctttcataacattttggatatggcgtttagct
tttgtgaggagtttgggtgaagctcagaggttattcttaagccatttatcaactgcagtt
attctgactgattgcctccatggcttcctactttctgcaagcattgtcttcatttttctt
ggggccacttctttgagagattactttaggcatttgcgagaaattggggggcaggatgct
gatagagaagatgaagtggacagaaatggtgctcgaattgctagaaggcctgctgggcaa
gctaatcgtaatgttaatggtgatgcaaatggagaagatgctggtggagcacaaggagtt
gcaggagcaggtcaagtaattagaagaaatgctgaaaatgttgctgctcgatgggagatg
caagcagcacgtcttgaggctcatgttgaacagatgtttgatggtctggatgacgctgat
ggagcagaagatgtaccctttgatgaacttgttggcatgcagggtccagtttttcatttg
gttgaaaatgcatttactgtgcttgcaagcaatatgattttccttggggttgtaatattt
gtgcccttctcattaggccgcatcattcttcattatctatcgtggttcttttcaactggt
agtggtcctgtgttatcagtggtcccacctacagatacttctctttcccttgcaaatatt
acattgaaaaatgcattaacagctgttcaaaatatatcaactgatactcaagaaagtgga
tcaattggtcagattgcagaaatgctaaaagtgaatgcaagtgatttgagtgaaatgtca
aacaacataagtgcatctgtttcaactgatctcttgaatggagggtcaattggaacttcc
aggatttctgatgttactactctggctattggatatattttcatattgactctaattttc
tgctacttcggtgttgttgcgttaattcgttacacaaagggcgaacctttgactaccgga
agattttatggtattgcttctatagcagagacaattccatctctcttcagacagttttta
gcagcaatgaggcatttgatgaccatggtaaaggttgctttcctattagttattgaacta
ggggtatttcccctcatgtgtgggtggtggctcgatgtttgtactatacagatgttcggg
aagacaatggctcacagagttcagttcttctctgcatctcctttagcgagctcattggtt
cattgggtcgtagggatcgtgtacatgctacaaattagcatatttgtcagccttcttaga
ggggttttgcggaacggggttttgtacttccttcgggatcccgctgatccaaactataat
ccattccgtgatctgatagatgatcctgtgcacaaacatgctcgcagggttttgttatct
gttgctgtttatgggagtttgattgttatgctggtatttttgccagttaaacttgcaatg
cggatggctccttccatttttccacttgaaatactgctatctgatcccttcaccgaaatt
ccagctaacatgcttctctttcagatctgtataccatttgctattgaacattttaaattg
aggacaactattaaatccctacttcgttattggtttacggcagttggttgggcacttggt
ttaactgatttcttactgcctagtcctgatgacaatggtaatcaagaaaatgggaatggg
gaacgaggtaggcaggaaagattacagattgcacaagcaggggtacacgatcagggtata
gttccatttgcaggcgatgatttgaacagagtcactaatgcagatgctggagaggattat
gacaatgatgaacaatctgattctgacagttacgccttcgtacttcgcattgttctttta
ttggtcattgcttggatgactctacttattttcaactctgccctggtagttgtaccaata
tcactgggaagaatacttttcaattccattcctcgtctgcctataactcatggcattaag
tgcaacgatctgtatgccttcatcattggaagttatgttatctggactgctgttgccgga
gttagatactcaatcgagcaagttagaaaaaggaggacttcagttttgttgaaccagatc
tggaagtggtgtagcattgttgtcaagagttctgcacttttgtctatatggatatttgtc
ataccagtgctaattgggcttctctttgagcttttagtcattgtgccaatgagagttccg
gtggatgaaagtccagtattcctcctttatcaagactgggcattaggccttatatttctc
aaaatatggactagattggttatgttggaccacatgatgcctctaatggatgaaagttgg
cgagtaaagtttgagagggtgagagaggatggtttctccaggctgcaaggtctttgggtc
cttcgggagattgtacttccaatcataatgaaactattgacagcattatgtgtaccttat
gttttggcgagaggtatgtttccagcgcttgggtacccattggtggtcaattctgctgtc
tatcgatttgcatggttaggatgcctctctttcagtttcgtgtgcttctgtgccaagaga
tttcacgtctggttcacaaatctccacaattcaatacgtgatgaccgatatcttattggc
cggaggttgcataactttggagaacatgttgagaaggcaaacgaagcagcaacttctaca
ggagtgcaggatactattttactggattcaaatttaaatcaacaagatcgtgatgcagat
gttggtttacggttgaggcacatcaatcaacaggcgggctga
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