Trifolium pratense (red clover): 123907284
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Entry
123907284 CDS
T08949
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123907284
09123 Folding, sorting and degradation
03018 RNA degradation
123907284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123907284
03041 Spliceosome [BR:
tpra03041
]
123907284
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123907284
mRNA degradation factors
5'-3' decay
Lsm complex
123907284
Spliceosome [BR:
tpra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123907284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF3294
DUF150_C
Motif
Other DBs
NCBI-GeneID:
123907284
NCBI-ProteinID:
XP_045813438
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Position
LG2:complement(39376502..39378617)
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AA seq
99 aa
AA seq
DB search
MATGGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVL
GLYIIRGDNISVVGELDEELDSNLDLSKLRAHPLKPVIH
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgggggtcctggactcgagtctcttgtagatcagcaaatttcagtcattaca
aatgatggacgaaatattgtgggagtcctaaaaggttttgaccaggcaacaaatataatt
cttgatgagtcacatgaacgagttttttctaccaaggaaggtgttcaacaacttgttctc
ggtttatacatcattaggggtgacaacataagtgttgttggtgaactggatgaggaacta
gattctaacctagatttgtccaagctaagagctcatcccttaaagcctgtcatccactaa
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