KEGG   Trifolium pratense (red clover): 123907327
Entry
123907327         CDS       T08949                                 
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
  KO
K14554  U3 small nucleolar RNA-associated protein 21
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    123907327
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tpra03009]
    123907327
Ribosome biogenesis [BR:tpra03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    123907327
SSDB
Motif
Pfam: Utp21 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_EIPR1 NBCH_WD40 PEP5_VPS11_N Beta-prop_WDR75_2nd Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_VPS8 WDR54 WD40_RFWD3 WD40_like Beta-prop_IP5PC_F Nbas_N KIP1 VPS8_N VID27
Other DBs
NCBI-GeneID: 123907327
NCBI-ProteinID: XP_045813494
LinkDB
Position
LG2:7131700..7140526
AA seq 920 aa
MGIFEPYRAIGCIATGIPFSIQRLGTETFVTVSVGKSFQIFNCAKLTLVLVAPQLPNKIT
ALASFRDYTFAAYGTNIAVFHRAHQVATWTSHNAKVKSLLLFGDHVVSLDATGDLFLWEF
KGIKDNLVPFTSPRHIKLDHNFIPTCIVHPDTYLNKILIGSEQGTMQLWNINTEKKIFEF
KGWDSPISCIVSSPALDVVAVGCTDGKIHVHNIRYDQELVTFTHSTRGSVTALSFSTDGQ
PLLASGGSSGVISIWNLEKKRLHSVVREAHDGVITSLHFFANEPVLMSSSADNSIKMWIF
DTSDGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQLHV
SKRAKKMRVKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTVQAYVWRLQNFVLGKHIL
TPCPENPTPVKACAISACGNFAILGTAGGWIEKFNLQSGIRRGVYIDMSESRSCAHDSEV
VGVACDSTNTLMITAGYQGDIKVWDFKERVLKSRWDIGCSVVKIVYHRYNGLLATVADDL
IIRLFDVVALRLVRKFEGHTDRITDLCFSEDGKWLISSSMDGSLRIWDVILARQIDAIQV
DVPITALSLSPNMDILATTHVDQNGVYLWVSQAMFSSSSNVDSYASGKEVVSVKLPSISS
TGDAQVEHSGELVIASQPKDAPAFPTQDKQIPDLVTLSLLPKSQWQSLINLDIIKVRNKP
IEPPKKPEKAPFFLPSVPSLSGEILFEPGKVSVTEKDGVDSEKQKNKTRLDTPSSRFLYL
LQSTKDSNSFAAFTEYIKGLDPSTLDMELRMLQIIDDDDDDDDDDNDEQEDEKRPELVSI
EQLVDYFIFELSSRNNFEFLQAVIRIFLKIHGETIRKHSHLQEKARKLLDIQCMVWQRVD
KLFQSTRCVVSFLSNSQIHV
NT seq 2763 nt   +upstreamnt  +downstreamnt
atgggtatatttgaaccttacagagctatcggatgtatcgccaccggcatccctttctct
attcagagactcggcaccgaaactttcgtcactgtcagcgtcggcaagtcttttcagatt
ttcaattgtgctaagctcactttggttctcgttgctcctcaattacccaacaagattact
gctcttgcttcttttcgtgattatacttttgctgcttatggaaccaacatcgctgttttc
caccgtgcacatcaggttgcaacttggactagccataatgctaaggttaaatcgttactg
ttgtttggagaccatgttgttagtctcgatgctaccggtgacttgtttttgtgggagttc
aagggaatcaaggacaaccttgttccctttacaagtccccgccatattaagctagatcac
aattttatccctacctgtattgtgcatccggatacttaccttaataagattcttattggg
agtgagcaaggcactatgcagctttggaacattaacacagagaagaaaatatttgagttt
aagggttgggattcacctatctcctgtattgtctcctcccctgcactagatgttgttgct
gttggttgtacagatggaaagattcatgttcacaacatccgttatgatcaggaattggtt
acgtttacacattctacgcgtggttctgtcactgctttatctttcagcactgatggacag
ccccttctggcttctggaggttcatctggtgttattagcatatggaatcttgaaaagaaa
aggctccactcagttgtgagagaggctcatgatggtgtgataacttcactacattttttt
gctaatgagccggtgctaatgagttcatcagcagacaactctattaaaatgtggattttt
gacacaagtgatggtgaccctcgccttttgcgctttcgaagtgggcatagtgctcctccc
ctctgcataaagttttatgccaatggaagacatattctttctgctggccaggatcgagcc
tttcgccttttctctgttgttcaggatcaacaaagtagggaactttctcaactccatgtt
tctaaacgtgctaagaagatgagagttaaggaggaagaaataaaattgaagcctgtgatt
gcgtttgattgtgctgaaattcgagagcgcgattggtgtaatgtggttacttgccatatg
gatactgttcaagcatatgtgtggagacttcaaaattttgttcttggaaagcatatattg
actccatgccctgaaaatccaacacctgtaaaggcttgtgccatcagtgcttgtggcaat
tttgccattttagggacagctggtggttggatcgaaaaattcaaccttcaatcaggaatt
cgcaggggtgtttacattgacatgtcagaatcaagaagttgtgctcatgatagtgaagtg
gttggagttgcttgtgactcaacaaatactctcatgataactgcgggatatcaaggagat
ataaaggtttgggatttcaaagaacgggtacttaaatccagatgggatattggttgttct
gttgttaagattgtttaccatcgttataatggtctcctggctacagtagcagatgattta
ataattagattgtttgatgtcgtggctctcagacttgttcgtaaattcgaaggacacaca
gatcgtataacagatttgtgcttcagtgaggatgggaagtggcttatatcatccagtatg
gatggaagtcttagaatttgggatgtgatcttagcgagacagatagatgctatacaagtt
gatgtgcctatcacggcgttatcactgtccccaaacatggatatattagccactacccat
gttgatcaaaatggggtatacctgtgggtaagccaggcaatgttctctagtagttcaaat
gttgattcatatgcaagtggaaaagaggttgtgagcgtcaagttgccatctatctcttcc
acaggagatgctcaagttgagcattctggtgagctggtgattgcctctcaacctaaagat
gctccggctttcccaactcaagataagcaaatacctgatttagttacactttcattgctg
cccaagagtcagtggcaaagcttgatcaatttagacattataaaggttcgcaataaacct
attgagcctccaaaaaaacctgaaaaggctccattcttcctgccatcagttccatcgctc
tcgggggaaatattgtttgagcctgggaaggtatcagtaacagaaaaggatggagtagac
agtgaaaaacaaaagaacaagacaagattggatacaccatcatcccgttttctgtatctt
cttcaatccacaaaagattcgaacagttttgcagcattcaccgagtacatcaaaggatta
gatccatcaactctggatatggaactccgaatgcttcagatcattgatgatgatgatgat
gatgatgatgatgacaatgatgagcaagaagatgagaagagacctgagttggtgtcaatt
gaacagcttgtggattattttatttttgagctctcctccagaaacaattttgagtttcta
caagctgtcatcaggatatttttgaagatacatggcgagacaattcggaaacattcacat
ttacaagaaaaagcaaggaagctcctagatattcagtgcatggtatggcaaagggtagat
aagctgtttcaaagtacgaggtgtgtggtttcctttctcagtaattcccaaatccatgtt
tga

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