Trifolium pratense (red clover): 123907388
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Entry
123907388 CDS
T08949
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpra03036
]
123907388
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
123907388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
PHD_2
TPR_DNAAF5
IFRD
Motif
Other DBs
NCBI-GeneID:
123907388
NCBI-ProteinID:
XP_045813599
LinkDB
All DBs
Position
LG2:3326719..3339523
Genome browser
AA seq
1812 aa
AA seq
DB search
MNSPTTSDAVTAAQSLSDHRGISMSNTIHSEITSCLPLPSLPVFCGASDQDLRLFDSPLL
LNRVDILAQSSKIAEMLRNTDVSYLNLRDDANAVRYNYVEPLELHDEVLRCNPEAFECST
AGKQSPVKEKISGSALPEKKLSESSFSVPSQTQKDYNATHSRQLDNFSTNDISTLSSKKS
KVKKKAGNGLSIAPDPTELQDASIGRFREFLEDLCSKAERNSGDLDEAVELLSLSLSDLR
TLVNEIMSIREKKLLHLVPVEFLVRLLKVLDHQIHIAEGLSIEDCDNSNSEQVSSLFAAL
ESIHAALAVMAHTDMPKQLYKEEVIERILEFSRHQITDVMCACDPSYRALYRPSENTALE
VDDEEYDAELGSASKKRRTSSKTVKLKKSASSRFSSAVNVILQKSCTVLGLLKDLLLIER
LSDSCILQLVKTCISTFLVDNIQLLQLKAIGLLSVIFYLYTQHRTYVLDEMLHLLWKLPH
SKRALRNYHIREEEQRQIQMITALLIQLIHCSANLPDTLRLASSGNSVLEVSVDASYPTK
CRDAVREACGLFWSRVIHRVANAKTQDASELKSIMENLVTDLLTTLNLPEYPASASILEV
LCAILINNAGSNSKDFAARSMAIDILGTIAARLKRDAVICSREKFWVLQDLLSENAARPH
YPKDTCCICLGGRIENLFICSGCNRLFHADCLDIKENEVPNRNWYCHICICSKQLLVLQS
YCNSQRKDDVKKNRKVSMDDSAFSNHEIVQQLLLNHLQDVTSDDDLHIFICWFYLCVWYK
NDPKSQQKPIYYFARMKSRTIIRDSGTVSSMLTRDSIKKITLALGQKSSFSRGFDKIFHT
LLVNLKENSPVIRAKALRAVSIIVEADPEVLGDKQVQTSVEGRFCDSAISVREAALELVG
RHIASHPDVGFKYFEKITERIKDTGVSVRKRAIKIIRDMCSSNANFSEFTRACTEIISRV
IDDESSIQDLVCKTFYEFWFEEPSASQTQIFGDGSTVPLEVAKKTEQIVEMLKRMPNNKL
LVTVIKRNLTLDFLPQSTKAIGVNPVSLVTVRKRCELICKCLLEKILQVEEMNSNEGEKL
VLPYVLVLHAFCLVDPTLCAPASNPSHLVITLEQYLKTQVDNSMVAQLLESIIFIIDAVL
PLLSNQLTLGFVEELEQDLTQMIRRHSFLTVVHACIKCLCSMSKIAGKGATAVQHLIQVF
FKCLEDTQAVVNKQQVGRSLFSLGLLIRYGNCLFAGSGNELVDVKRSLGLLMKYLAVEDC
TLQVRSLQALGYVLIARPEYMLENDIGKILEGTLSNIANERIKMQALQNMFEYLLDAESK
METDKVDGNVPGHLVGAGQSVPVAAGAGDTNICGGIIQLYWDNILGRCLDLNEQVRQSAL
KIVEVVLRQGLVHPITCVPHLIALETDPLEPNSKLAHHLLMNMNEKYPAFFESRLGDGLQ
MSFMFMQSICVSPNENVNHKTQSKIHVSGKGKPQADSLTQSRVGVSRIYKLIRGNRISRN
KFMSSIVRKFDNPRWNKFVISFLTYCTEVLALLPFIAPDEPLYLIYAINRVVQVRAGPLE
ANFKAWSSSLSRSEGDGTPHGNGMYPQAPDEPIHTTQVQSLDLNGTYQQNVDVRPYLNDM
TSVDLNGTNHQLPDYPLSHNGRSKVKLHAAGFADAFTFSKDDLEKVQADCLSAIALQLLL
KLKRHLKIMYSLDDARCQAYSPSEPPKPGDVFSKQNVPFNICESQFSLPTCPQELIQRYQ
EFKNALKEDTVDYSLYTANIKRKRQTPRKIRKSGPMVGANIDEDDDEDWAGGMRNINFSG
GRRTSLRSSRQY
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atgaattctccaactacttccgatgccgttacggcggcgcagtctctctccgaccaccgc
ggaatcagcatgtcaaatactattcactccgaaatcacctcttgcttgccgttaccttcg
cttccggttttctgcggagcttccgatcaagacctacgactcttcgattcaccgttgctg
ttgaaccgcgtcgatattctcgcacagtctagcaagatcgctgagatgctccgaaacact
gatgtttcatacttgaatttaagagatgatgccaatgctgttcggtataactatgtcgag
cctttagaactccatgatgaagttcttaggtgtaatcctgaagcatttgaatgcagcact
gcaggtaaacagagtcctgtcaaggagaagatctctggtagtgcattacctgaaaagaag
ctctctgaatcaagtttttctgtcccgagtcagactcaaaaagactataatgcaacccat
agccgacagcttgataatttttctacaaatgacatttctacattgtcttctaagaaatca
aaagttaagaagaaagccggtaacggattatctattgcacctgaccctactgagcttcaa
gatgccagcattggaagatttcgtgagtttttggaggacttatgtagcaaggctgaacgg
aatagtggtgatctagatgaagcagtagaattgttgtcattgtctctttcagatcttaga
acgcttgttaatgaaataatgtctatacgtgagaagaaacttctgcatttggtccctgta
gaattccttgttagactgctaaaggttttagatcatcagatacacatagcagaaggcctg
tcaattgaggattgtgacaattccaattcagaacaagtttcgtctctttttgctgcgttg
gaatccattcatgctgcactggcggtgatggctcatactgacatgccaaaacaactttat
aaagaagaggtcattgagagaattctggagttttccaggcatcagataacggatgtgatg
tgtgcatgtgatccttcataccgggcattatacagacctagtgaaaacactgcacttgaa
gttgatgatgaagaatatgatgctgaattaggctcagcaagcaaaaaacgacgtactagc
agcaagactgtgaagttgaagaaatcagcatcaagcaggttctctagtgctgtgaatgtt
attcttcagaagtcgtgtactgttcttggactactcaaggatttgttgttaatagagagg
ttgtcagatagttgcattttacaacttgtaaaaacatgcatttcaacgttcttggttgat
aacattcagctcttgcaattgaaggcaattggtttactcagtgtgatattctatttatac
acacaacatcgtacttatgtgttagatgaaatgcttcaccttctttggaaattaccgcat
tcaaagcgagctttaaggaattatcacatacgtgaggaagagcaaagacagatccagatg
attactgctttgttgatccaattaattcattgtagtgctaaccttcctgatactttaaga
ctagcatcaagtggtaactctgtattggaagtctcggttgatgctagttatccaactaaa
tgccgtgacgcagtaagagaggcctgcggtctattttggagccgtgtaattcatcgagtt
gcaaatgcaaagactcaggatgcttctgaactgaagtccataatggagaatcttgttact
gatttactgaccactctaaatttacccgagtatcctgcttcagcttctattctagaggtt
ctatgtgctatactaattaataatgctgggtcaaactccaaggatttcgctgcacgttcc
atggcaattgatattcttggcactattgctgcaaggttgaagcgtgatgctgtgatttgt
agccgggaaaagttctgggtacttcaagatttacttagtgagaatgctgctcgtcctcat
tatccaaaagatacatgttgtatctgtttgggtggaaggattgaaaatttgttcatatgt
tccggctgcaataggctttttcatgctgactgtttggacattaaagaaaatgaagttccc
aaccggaactggtactgtcatatctgcatctgctcaaagcaactgcttgtattacaatca
tattgcaattcccagcgcaaggatgatgtaaaaaagaatcgtaaagtgtcaatggatgat
tctgcattttctaaccatgaaattgttcaacaattgcttttgaatcaccttcaagatgtc
acctctgatgatgacctgcatattttcatttgctggttttatctatgcgtatggtataaa
aatgatccaaaatctcagcagaagcccatttactactttgctaggatgaaatcaagaacc
ataatacgggattctggtactgtttcttctatgctgacgcgagattcaatcaagaagatt
actctagctttaggccaaaaaagttcatttagtcgaggctttgataagatttttcacaca
cttttggtaaatttgaaggagaactctccagttattagggctaaagctttacgagcagtt
agcatcattgtagaggctgatccagaggtattgggtgataaacaagttcaaacatctgtt
gaaggtaggttctgtgacagtgcaatatctgttagagaagcagcattggaacttgttggt
aggcatattgcttcgcatccagatgtgggttttaagtattttgagaagattacagagaga
atcaaagatactggagtgagtgttcgaaaacgagccataaaaattattcgagatatgtgc
agctcaaatgccaacttctcggagtttacaagagcctgcacagagataatttctcgtgtt
attgatgatgaatccagtatccaggatcttgtttgcaaaacattttatgagttctggttt
gaggagccttctgcttcacaaactcagatctttggagatggtagtactgttccacttgag
gtagctaagaaaacagagcaaattgttgaaatgttgaagagaatgcccaataataagctt
cttgtaactgtaataaagcgcaacttgacacttgattttttaccacaatctacaaaagca
attggggtcaacccagtgtcccttgtaacagttcgtaagcgttgtgagttgatttgcaaa
tgcttgctggagaagatattgcaggtggaagaaatgaacagtaatgagggggaaaaactt
gtgcttccgtatgtgctagtcttgcatgcattttgtcttgtggacccaactctatgtgca
ccagcttctaacccttcccaccttgtcattactttggagcaatatctgaagactcaggtt
gacaatagcatggtcgcacaattacttgagagtataatatttataattgatgctgtgttg
ccattgctgagtaatcagttaactctgggttttgtggaggaacttgagcaagatttgacg
cagatgattcgccgacattctttcttgacagttgtccatgcttgtatcaagtgcctctgc
agtatgagtaagattgctgggaagggggctactgcagtccagcatcttattcaggtcttc
ttcaaatgtttggaagatacccaggcagttgtaaacaagcagcaagtcgggcgatctctc
ttctctcttggtttgcttattcgttatggcaactgtttgtttgccggctctggtaatgaa
cttgttgatgtcaaaaggagtctcggcttgcttatgaagtatcttgctgtggaggattgt
actcttcaggttagatcattgcaggcactaggatatgttctaattgcaaggcctgaatat
atgttagaaaatgacattggaaagatactggagggaacattgtctaacattgctaatgaa
cggataaagatgcaagcattacaaaacatgtttgagtatcttcttgatgctgaaagcaaa
atggaaacagacaaagttgatggtaatgtacctggtcacttggtcggagctgggcagagt
gtacctgttgctgctggtgctggggatacaaacatatgcgggggtataattcagttgtac
tgggataatattttgggcagatgtttggatttgaacgaacaggttcgacaatcagccttg
aagattgttgaagttgtgttgcgccaaggtcttgttcatcccatcacttgtgttccacat
cttatagcactagaaacagatcctctggagccaaattcaaagttggctcatcatctccta
atgaatatgaatgagaagtaccctgcattttttgaaagccgattgggtgatggacttcaa
atgtcttttatgttcatgcaatctatttgtgtcagtcctaatgaaaatgttaaccacaag
acccaatctaagatccatgtttctggaaaaggcaagccccaggccgattcgctcactcaa
tcaagagttggggtttctcgaatatacaagctcatccgagggaaccggatatcaaggaac
aaatttatgtcctcaattgtacgaaaatttgataatccaagatggaacaaatttgtaata
tctttcttaacgtactgcacagaggtccttgccttgcttccattcattgcacctgatgaa
ccactttatttaatctatgctatcaatcgagtagttcaggttagggctggtccgctggag
gcgaacttcaaagcctggagttcaagcttgtcacgaagtgagggtgatggtacacctcat
gggaatggaatgtatccacaggcaccagatgagcctattcatacaacccaagtccagtca
ttggatttaaatggcacatatcagcaaaatgtagatgttcgtccctacctcaatgatatg
acatcagtggatttaaatggaacaaatcaccaattgccagattatcctttatcacataat
ggtagatcaaaagtaaagctacatgctgcaggttttgcagatgcctttaccttctcaaaa
gatgatcttgagaaagttcaggctgactgtttatccgcgattgcattgcaacttcttttg
aagttaaagagacacctaaaaatcatgtatagtctcgatgatgccagatgtcaggcttat
tctccaagcgaaccaccaaaacctggagatgttttttcaaaacagaatgttccatttaat
atttgtgaatctcagttcagtttgcctacatgtccgcaagaattaatacaaagatatcag
gagtttaagaatgcattgaaggaagatacagtggattattcactctacaccgcaaatata
aaacggaagcgacaaacacccagaaaaattcggaaatctggacctatggtaggtgctaat
attgatgaggatgacgatgaggattgggctggtggaatgcgcaatataaattttagtggt
ggccgcaggactagccttagaagctccagacaatactga
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integrated database retrieval system
