Trifolium pratense (red clover): 123907617
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Entry
123907617 CDS
T08949
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123907617
Enzymes [BR:
tpra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123907617
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
123907617
NCBI-ProteinID:
XP_045813909
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Position
LG2:16340593..16343852
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AA seq
376 aa
AA seq
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MGNAHGHHHRKHRFSVPNNTVPPPTPPYKYGSTSQLHNPPNNNNMISLPYANADITLRSL
AAQAEGFGRFATGGLHGSLYHVTSLLDDGPGSLRDACRKKEPLWIVFEVSGTIQLSSYLS
VSSYKTIDGRGQRIKLTGKGFRLKECEHVIICNLEIEGGRGPDVDAIQIKPNSKHIWIDR
CTLSDFEDGLIDITRGSTDITISRCHFHQHDKTILIGSDPKHVDDRCMKITIHHCFFNGT
RQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLHEKAAD
KEAEATGHIISEGDIFLNGAQPGLMTENIGIKVFHPSEHYLTWTVGAPTDDLKQVLHHYT
GWQSVARPADQAVCAE
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgggtaacgcacatggacatcatcatcgcaaacaccgtttttccgttccaaacaacacg
gttcctcctcctactccaccttataaatacggttctacttctcagcttcataatccacca
aacaacaacaacatgatttctttgccttacgccaacgccgacattactctccgttccctc
gccgctcaggctgaaggctttggccgcttcgcaaccggtggacttcatggttctctttat
catgtcacatcactcttagatgatggaccgggatcattgcgtgacgcatgtcgcaaaaaa
gagcctttgtggattgtgtttgaggtttctggtacaattcaactttcgtcttacttgagt
gtgtcatcatacaagaccattgatggaaggggccaaaggattaagctgactggaaagggt
tttcggctgaaggaatgtgaacatgtaatcatttgtaatttagagatcgaagggggcaga
ggacctgatgttgatgctattcagattaaacctaattcaaaacatatatggatagatcgt
tgcactctcagtgattttgaagatgggctcattgatatcactcgaggaagcactgatatt
acaatttcaaggtgtcactttcatcagcatgacaaaacaatactcattggatcagatccc
aaacatgttgatgatagatgcatgaagatcaccatacaccactgttttttcaatggtact
cgacaaaggcatcctcgtgttaggttcgcaaaagtacatctgtacaacaattacaccaga
aactggggtatatatgctgtttgtgcaagtgttgaatcccagatattctctcaacataat
atctatgaagcgggccagaagaaggttgcttttaagtatcttcatgagaaggcagcagac
aaggaagctgaagcaactggacacataatttctgaaggagatatatttttaaacggtgct
caaccagggttgatgacagagaatattggcattaaggtgtttcatccgagtgaacactat
ctcacatggacagtgggagctcctacagatgatctaaagcaagttcttcatcactatacc
ggatggcaatctgttgcgaggccagccgatcaagccgtttgcgcagaataa
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