Trifolium pratense (red clover): 123907691
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Entry
123907691 CDS
T08949
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123907691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123907691
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
123907691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_16
TPR_14
TPR_8
TPR_19
TPR_9
TPR_12
TPR_17
ARM_TT21_C
BTAD
TPR_7
TPR_10
DB_JBP1
Sel1
Motif
Other DBs
NCBI-GeneID:
123907691
NCBI-ProteinID:
XP_045814010
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All DBs
Position
LG2:complement(73666772..73680500)
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AA seq
1181 aa
AA seq
DB search
MASETTHTDEEQHLFQRLKDSSDDASLHFDIGLLLWNKDGGDANSKEKAAEHFILSAKYN
PKNGESFKYLGHYYGGVSLDTQRALKCYQRAVAINPDDFESGEALSDLLDQGGKDSLEVA
LCLEATKISPRAFWAFRRLGFLLVHQNKWSEAVQSLQHAIRGYPTCADLWEALGLAYQRL
GRFTAAVKSYGRAIELDNKMLFALVESGNISLILGQFKKGVEQFQQALEILPDCVPAQYG
LALGLLSLAKDCINLGAYQWGSSLLEEASEVARKSARSFMNISCIWKLHADIQLAYARCN
PWIEEVQKLESDKEAFSASIISWRKTRFLAATHARFSYQRALHLSPWQANIYSDIAVTSD
LITSLSKNFKQDLSARQLAEKMSVGALLLEGDNYEFWVALGCLSDHNALNQHALIRGLQL
NVSLAVAWGYLGKLYFKAGEKQLARQVFDRARSIDPGLALPWASMSAESYGSREPAPDEA
FESCSRAVQIMPLAEFQIGLTKLALLSGHLSSSQVFGAIQQAVQHSPHYPESHNLHGLVC
EARKDYKSAATFYRLARHAFSIGSQSNQNSHIRDVSINLARSLSKAGNAADALQECENLK
KEGALDEEGLHVYAFSLWQHGEKDLALSVAGSLAASLSSMKKASVAASICFISRLVYFIC
GLDAVITSIVKMPKELFQSSKVSFVMSAINALDAQNRLGLVVASTRYFLKYQEEISRMHF
LIALGKLVKNESDFCLDVKSGIAYLRKALHMFPNCNLIRNLLGYLLLFCEELNNCHVATR
FCKLDHPDMSDQEGLKSAYDIHGAGAVACYVTDNNPKFTFPTCSKKCSSHPRAIKYLQKY
IHQKPWNHDAHYLLVLNYLQKAREQRFPHHLCGLLNRLIQTALSNELYSETEMRYQYRHF
QLLLCASEISLQCGNHMSCITDAKKASQLVLPDDYLFFAHLLLCRLYAMKDDHLNFQKEY
AKCLELRTDCHIGWICLKLMECHFELEIDSNAIDLNFEECIKRGGNSWNMWMAAYNLVRG
VNLLQKRDLVSAEEFVAQACSLAGFESCLFLCHGAICMELVRQHSSPHYLSQAIKSLTKV
REFSLVPLPFASILLAQAEGSLGSKEKWDRNLRLEWYNWSSEMRPAEVYFQMHLLARQLK
VGLSSMSSMESSQSPHRWVIQAIHANPSCMRYWRVLQKLME
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgaaacgacgcatacggatgaagaacaacatctcttccaacgcttgaaggat
tcctcagacgacgcctctctacattttgatattggcttattattatggaataaagacgga
ggagatgccaactccaaggaaaaagctgctgaacattttattttatcggcaaaatataac
cctaaaaacggagaatctttcaaatatctagggcattattatggaggcgtttcccttgat
actcagagagcccttaagtgctaccagcgagctgttgctatcaaccctgatgatttcgag
tctggggaagctctttccgatttacttgaccaaggtggaaaggacagtttggaggtcgca
ctatgccttgaagctactaaaatctcaccacgtgctttctgggctttccgcagattaggt
ttcctgctggttcatcagaacaaatggtccgaagctgttcagagtcttcaacatgccatt
cgaggctatcctacttgtgctgatttgtgggaagctttgggccttgcttatcagcggctg
ggcaggtttactgcagctgtaaagtcttatggccgtgcaatcgagttggataataagatg
ctatttgctttggtcgaaagtggaaatatttcattgatacttggtcaatttaaaaagggg
gttgaacaatttcaacaagctttggagattttgccagattgtgtgcctgcacaatatgga
cttgctttgggactgcttagtttggcaaaagattgcattaacctaggagcatatcagtgg
ggatcttcattgttagaggaagcatctgaggttgccagaaagagtgctcgttctttcatg
aatatctcgtgtatttggaagctacatgcagatattcagcttgcatatgcaagatgtaat
ccttggattgaggaggtccaaaaattggaatctgataaggaagcctttagtgcttctatc
atttcatggaggaagacccgctttttggctgcaacacatgctaggttttcgtaccaacga
gccttacacttatctccatggcaagcaaacatctacagtgacattgcagtaacttcagat
ctcattacatcattgagcaaaaattttaaacaagacttaagtgcacggcagctagcagaa
aagatgtccgttggagccttgctactcgagggtgacaattatgagttctgggtggcattg
gggtgtttgtctgaccataatgcactaaaccagcatgctttgatcagaggactgcaatta
aatgtatctctagctgttgcttggggatatcttgggaagttatattttaaagcgggtgaa
aagcaattggcaagacaagtgtttgatcgtgcacgaagtattgatcctggccttgcattg
ccatgggcaagtatgtcagctgagtcttacggaagtagggagccggcgccagatgaggca
tttgaaagctgttcccgagccgtgcagataatgcctttagctgaattccaaattgggcta
actaagcttgctttgctgagtggccatctttcatcttcacaggtttttggagctattcag
caggctgtacagcattcccctcactatcctgaatcccataacttacatggactggtatgt
gaggctcgaaaagattacaagtctgctgctacattttataggttagcacgtcatgcattt
agcattggctcacagagtaatcaaaactcacatataagggatgtttctatcaatttggct
agatcactttccaaggccgggaatgctgctgatgctttgcaggaatgtgaaaatttgaag
aaagaaggggcgcttgatgaagaaggtttgcacgtgtatgctttctcgttatggcaacat
ggtgaaaaggatttggctctctctgtagctgggagtcttgctgcaagtctttcttctatg
aagaaagcatctgtggcggcatccatttgtttcatcagtagattagtgtacttcatatgt
ggactggatgcagtcattactagcattgtcaagatgccaaaggagctatttcagagttca
aaagttagttttgttatgtcagctatcaatgcacttgatgcacaaaatcgtcttggattg
gtcgtcgcaagtacccgatattttctcaaatatcaagaagaaatttctaggatgcacttt
ttaatagcgcttgggaaattggtgaaaaatgaatctgatttctgccttgacgttaaaagt
ggaattgcctacctcaggaaagcgctgcacatgtttcctaactgtaatttgataaggaat
cttctgggctatctcttgcttttctgtgaagaactaaacaattgtcatgtggcaactagg
ttttgtaaactggaccatcctgatatgtctgatcaggaaggtttaaaatcagcttatgat
attcatggtgctggagcagttgcttgctatgtcactgacaacaatccgaagtttactttt
ccaacttgttcaaagaagtgttctagtcatccacgagctatcaaataccttcagaaatac
attcatcagaaaccatggaatcatgatgcccactacttgcttgttcttaattatcttcag
aaggcacgtgaacagagatttcctcatcatctctgtggtctactaaatcgtctaattcaa
actgctctttcaaatgaattgtatagcgagacagaaatgcgttatcaatatagacacttc
caacttctactttgtgcttctgagatcagtttacaatgtgggaatcacatgagctgtatc
actgatgccaaaaaggcttctcaacttgtgcttcctgatgattatttattctttgcacat
ctactattatgccgtttgtatgccatgaaagacgatcatctaaattttcagaaagagtat
gcaaagtgtttggagctcaggacagattgccatattggttggatctgcctcaaacttatg
gaatgccattttgaactggaaatagattcaaatgccatagacttgaacttcgaagaatgc
attaaaaggggtggaaattcatggaatatgtggatggctgcatataacctagtgagagga
gtgaatttgttgcaaaaaagggatttagtctcagccgaagagtttgtggcacaggcttgt
tcattggctggttttgaaagctgcctctttctatgtcatggtgccatctgtatggagctt
gtcaggcagcacagtagtcctcactacctatcacaggctattaagagccttaccaaagtt
cgtgagttttcgctggttcccttaccttttgcctcaatactattggctcaagcagaagga
agccttggttctaaggagaaatgggacagaaaccttcgccttgaatggtataattggtcg
tcagaaatgaggcctgcagaggtctactttcaaatgcatttgcttgccagacagttgaaa
gttgggctaagctctatgtctagcatggagtcctctcaaagtccccatagatgggttatt
caggcaatacacgcgaatccttcttgcatgcgatattggagggttttacagaagcttatg
gaataa
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