Trifolium pratense (red clover): 123907860
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Entry
123907860 CDS
T08949
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123907860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123907860
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123907860
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123907860
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123907860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
VHS
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
123907860
NCBI-ProteinID:
XP_045814233
LinkDB
All DBs
Position
LG2:complement(4412603..4417666)
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AA seq
838 aa
AA seq
DB search
MSNEIGQKPPPSILVGRFKALLKQREDDPRLRNSQPSTEEIVQIYELLLSELTCNVKPII
TDLTIIAEQHREHAKGIAYAICARIIEVSADQKLPSLYLLDSIVKNIGQEYIRHFSSRLP
EVFCEAYRQVNPSLHSSMRHLFGTWSKVFPPSVLRKIDGQLQFSQVVNNQSSSGNPLRAS
ESPRPTHGIHVNPKYIRQMEHSTSIMDSVVGERLDSTGAVGNANLGLVASKINQFVPSRV
RRSSSPSRIGLDRHMPSYMDEYVADNPSGRTVERESPHRAVDYGLVKGLGREEELSDWPR
KQFSGDGRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVDRLDRNGMD
KVISTSWQNTEEEEFDWEDMSPTLVDHSRNNSFLQPTIGFSSEKPVAANATSSVSRMFPG
LTPNIEYRPPVLPATFEMRHSINVHAPRPLSLNPIFPLKNPVMNPFESINANSSIVNHGL
NRPFPNQDQLLHGVENNDITKRNQHQLPNQPAGLISSNPQNSGQPPQLQFFPSQDSAASQ
FTYRTPLQGHGASISNPLSNARPVMPLPLPGQRIPNNPLHFQGGAMRPFPPAGPHRPPQM
LPHPNPSPFVSSQQPSVGYSNLINSLMAQGVISLANQAPTQDFVGIEFDPDILKVRHESA
VSALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSG
AEALGTESAPGFLPTETTEEKKDDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRG
AVYLNAPNGILTSMDRSQLGPIIHAKCRSESTTSPSEDFVMDEGGTYEEGNQRKRMRA
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgagattgggcagaaacctccaccttcaatactcgttggtcgattcaaggct
ttgttgaagcaacgtgaagacgatcctaggttgagaaattcccaaccttcaactgaagaa
attgttcagatttacgagttgttgttatctgaactcacttgtaatgttaaacctatcatc
actgatcttacaatcattgctgaacaacatcgtgaacatgctaaaggaatcgcttatgct
atttgcgctcgtattattgaggtgtctgcagatcaaaagcttccttcactctacctcttg
gacagtattgtgaagaatattggccaggaatatattcgacatttctcatcacgtcttcct
gaagttttctgcgaggcatacagacaggttaatccaagtttgcattcttctatgcgacat
ctctttggtacctggtcaaaagtcttccctccctctgtcttgcgtaagattgatggacaa
ttacaattttctcaagtagttaataatcagtcatcaagtggtaatcccctcagggcttct
gaatcacctcgaccaactcatgggatacatgttaacccaaaatacataagacaaatggaa
cactctacttcaattatggatagtgttgtaggcgaaagattagactcaacaggagcggta
ggaaatgcaaatttaggccttgtagctagtaagattaatcaatttgtcccaagtagagtt
agacgatcctcatcaccatcaagaattggacttgataggcatatgccctcatatatggac
gaatatgtagctgacaatccttctggtaggacagttgagagagaatctcctcatcgtgct
gttgattatggactagttaaaggattaggtagagaagaagagttgagtgattggccgcga
aagcaattttctggtgatggtcggaaaagatttcaaacttctatgacatatagtcttagt
aacggacaaccgcgtcaaaatccaagagcgctaattgacgcctatggtagtgacaaaagc
caagaaacttctggcagcaagcctttgttagttgatcggctggatagaaatggtatggat
aaggttatttcaacatcatggcagaacactgaagaggaagagtttgattgggaagatatg
agtccaactctagtagatcacagtagaaataatagtttcttgcaaccaactattggtttc
tcctcagaaaagcctgttgcagcaaatgcaacttcttcagtgtcaaggatgtttccgggt
ctcacgcctaatattgagtaccgtccaccagttttgccggcaacttttgaaatgagacac
tctattaatgtgcatgctcctcgtcctctcagcttaaatcctatatttccattgaagaat
cctgttatgaatccatttgaatcaataaatgctaatagtagcattgttaatcatggttta
aatagaccttttccaaatcaagaccaattgttgcacggtgttgagaacaatgatatcact
aaaagaaaccagcatcaattacccaatcagccagctggtctgatttcatctaatccgcaa
aacagcggacaaccaccacaattgcagttttttccatctcaggattcagcagcatcacaa
tttacttataggacccctttgcaaggacatggtgcttctataagtaaccccctgtcaaat
gcacgccctgttatgccactccctttgccaggccaaagaatcccaaacaaccctttacat
ttccaggggggagctatgcgaccttttcctccggccggcccacatcgtccaccccaaatg
ctacctcatcccaatcctagtccttttgtgtcaagccaacagccatctgttggatattct
aatttgattaattcactcatggcccaaggtgtaatctcattggctaatcaagcccccaca
caggattttgttggcattgagtttgatcccgatattctgaaggttcgtcatgaatctgca
gtcagtgccttatatggtgatcttcctagacagtgcacaacttgtggcctccgattcaaa
tcccaagatgagcacagcagtcacatggattggcatgtgactaagaaccgtatgtctaaa
aaccgtaagcagaaaccctctcgcaagtggtttgtcagtgaaacgatgtggcttagtggt
gcagaggcattgggaaccgaatcagctccaggttttttgccaaccgagaccaccgaggaa
aagaaagatgatgaagaattggcagttcctgctgaagaggatcagaatacatgtgcatta
tgtggagagcctttcgatgagttttacagtgatgagacagaggagtggatgtatagagga
gctgtataccttaatgcgcccaatggaatactaacaagcatggacaggtcacagttagga
cctattattcatgctaaatgcagatctgaatctactacctccccatctgaagattttgtg
atggatgaagggggtacatatgaagaaggaaatcaaagaaaacgaatgcgggcatga
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