Trifolium pratense (red clover): 123907918
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Entry
123907918 CDS
T08949
Name
(RefSeq) N-glycosylase/DNA lyase OGG1 isoform X1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
123907918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123907918
Enzymes [BR:
tpra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
123907918
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
123907918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
RecR_HhH
HHH
HHH_8
DUF508
SPA
HHH_2
Motif
Other DBs
NCBI-GeneID:
123907918
NCBI-ProteinID:
XP_045814334
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All DBs
Position
LG2:complement(55737915..55741811)
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AA seq
371 aa
AA seq
DB search
MNSLNLATTQVRTIMKRKRSPKSLPPPPSTPPTPQTQTRHSTNVSKSRVWIPLNITRQEL
SLPLTFPTGQTFRWKNTAPSQYTGVVGPHLVSLKQLQNGDVCYSLHSQSQSNDDAKSALL
DFLNADVSLADTWKVFSASDERFAELAQHLSGARVLRQDPFECLIQFMCSSNNHISRITK
MVEYVSSLGNFLGHVEGFDFHAFPTLQQLSLVSEQQLRNAGFGYRAKYIVGTVNALQSKP
EGGEEWLRSLRKLELRDVISELSKLPGVGPKVAACIALYSLDQHHAIPVDVHVWRIAQKY
LLPELAGSKLTLKLCNRVAEAFVTKYGKYAGWAQAVLFIAELPSQKALLPSHLKTTKQQT
PTKRENREEAE
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgaattcattgaatcttgctaccacccaagtaagaacaattatgaagagaaaaagatcc
cccaaatcgctgcctcctccaccatcaacccctccaacaccccaaacccaaacccgccac
tccaccaacgtctctaaatcacgggtatggatccctctaaacataacccgacaagaactc
tcactacccctcacattccccaccggccaaaccttccgttggaaaaacaccgctccttct
caatacactggcgtcgtcgggccccacctcgtatccctaaaacaacttcaaaacggcgac
gtatgttactcccttcactcccaatcccaatccaacgacgatgccaaatcggcattgctt
gatttcttgaacgcggacgtttctctggctgacacgtggaaggttttctcggcttctgat
gaacgatttgcggaactggcgcaacatttgagtggtgctagggttttgagacaagatcct
tttgaatgcttgattcagttcatgtgttcttctaataatcatattagtagaatcactaaa
atggttgaatatgtttcgtctcttgggaatttcttaggtcatgttgaaggttttgatttc
catgctttcccaactcttcaacagctttcattggtctccgagcaacaactcagaaatgct
ggttttggttacagggctaagtatatagttggcacggtaaatgctttgcaatcgaaacct
gaaggtggggaagaatggcttcgttctcttcgaaaattggagcttcgagatgttatatct
gaactttcaaagttacctggagtgggtcctaaagttgcggcttgtatagctctatactcg
cttgatcaacaccatgctattcctgttgatgttcatgtgtggcggattgctcaaaagtat
ctcttacccgagcttgcaggttccaagttgacactgaagctttgcaatcgtgttgcagag
gcttttgtaacaaaatatggtaaatatgccggttgggctcaagctgttttatttattgct
gagttgccttcacaaaaggcccttctaccttcacatttgaaaactaccaaacagcagact
cccacaaagagagaaaaccgtgaagaagctgagtga
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