Trifolium pratense (red clover): 123907933
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Entry
123907933 CDS
T08949
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123907933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123907933
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123907933
U7-dependent histone pre-mRNA processing factors
123907933
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
MBL_MAP1B
BPS
Motif
Other DBs
NCBI-GeneID:
123907933
NCBI-ProteinID:
XP_045814354
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All DBs
Position
LG2:48086203..48097069
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AA seq
740 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNILIDCGWNDHFDPSLLQPLSRVASTIDAVLL
SHPDTLHLGALPYAIKQLGLSAPIYSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDID
SAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE
RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAG
RILELILMLESYWADENLNYPIYFLTYVSSSTIDYVKSFLEWMSDSIAKSFEQTRENIFL
LKNITLLVNKADLDNAPDGPKVVLASMASLEAGFSHDIFVEWGNDVKNLVLFTERGQFGT
LARMLQADPPPKAVKVTVSKRVPLVGEELIAYEEEQNRIKKEEALKASLMKEEELKASQG
ADNNTIDPMVIDTGNNQPSPEVAVQKNGGYRDVFIDGFVPPSTSVAPMFPCYENTSEWDD
FGEVINPDDYVIKEEDMDQTANNVGGDINGKLDESAASLIFDTKPSKVISDERTVQVRCS
LVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATDHLKQHCLKNVCPHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNVLFKKLGEYEIAWVDAEVGKTENDTLSLLPVSGAPHPHK
SVLVGDLKLADFKQFLSTKGVPVEFAGGALRCGEYVTVRKVGDATQKGAGSGTQQIIIEG
PLCEDYYKIRDYLYSQFYLL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcagtgcaagtaacaccactttgtggagtgtacaatgaaaatcctctttct
tacttggtttccattgatggcttcaatatcctcattgattgtggttggaatgaccacttt
gacccttcccttcttcaacccctttccagggtagcatcaactatagatgccgttttgctt
tcacaccctgatacacttcaccttggtgccttaccttatgccataaagcagcttggactg
tctgctcctatttattcaactgagccggtatatagattgggacttctcactatgtacgac
cagtttctctcaagaaagcaagtatcagagtttgatctgttcactctagatgacattgat
tctgctttccaaagtgtaacaaggctaacttactctcagaatcatcatttgtcaggcaag
ggagagggaattgtgattgcaccacatgttgctggacatcttttgggaggtacgatatgg
aaaattacaaaggatggtgaagacgtcatatatgctgttgattttaatcacaggaaagaa
aggcatttgaatggaactgttctaggttcttttgttcggccagctgttctaataactgat
gcttataatgctttgaacaatcagccttatagacgtcaaaaggacaaagaatttggagat
atcttaaagaagactctaagggctggtggcaatgtattactacctgttgacaccgccgga
cgaatcttggaacttattctgatgttagaatcgtattgggcggatgaaaacttgaactat
cctatatattttcttacatatgtttcatccagcactattgattatgtgaagagtttcctt
gagtggatgagtgattccatagcgaaatcttttgaacaaactcgtgaaaatatatttctt
ttgaagaatatcacacttctggttaacaaggctgacctcgacaatgctcctgatggtcca
aaggttgtcctagcatccatggcaagtttggaagcaggtttttcacatgatatatttgtt
gagtgggggaacgatgtcaagaatcttgtgctttttactgaacgaggccagtttggcacg
ctagctcgtatgcttcaggctgatccacctccaaaagctgtcaaagtcactgtgtccaag
cgagttcctttggttggtgaagagctaattgcctatgaggaagagcaaaaccgaataaag
aaagaagaagctttaaaagccagtcttatgaaagaggaagaattgaaagcatctcaaggg
gctgataataatactattgatccaatggtcattgatactggcaataatcaaccatcacca
gaagtggctgttcagaaaaatggaggataccgagatgtatttattgatggatttgttccc
ccttcaaccagtgttgccccaatgtttccctgttatgagaatacatcagaatgggatgac
tttggcgaagtcataaatccagatgattatgtaattaaggaggaagacatggatcagaca
gcaaacaatgtaggtggtgatataaatggaaaactagatgaaagtgctgcaagtttgata
tttgatacaaagccatcaaaagttatatctgatgaaaggactgtccaagtcaggtgttcg
ttggtttacatggattttgaaggtcgttcagatgggagatcaattaagaacattctctcc
catgtggctcccctgaagctggttttggtgcatggatcggctgaagctacagaccatctg
aagcagcactgcctgaagaatgtctgtcctcatgtttatgctccacaaattgaagagacc
attgatgttacctctgatttatgtgcttataaggttcaactatctgagaagttaatgagt
aacgtactcttcaaaaagcttggagaatacgaaatagcttgggttgatgccgaggtaggg
aagacagaaaatgacacgctttcgcttctccccgtttctggagcacctcatccgcataaa
tctgttctcgttggtgatttgaaattggcagatttcaagcagttcctctccaccaaaggc
gttccggtggaatttgctggtggggctttgcgttgtggtgaatatgtaactgttcgaaag
gttggggatgcaacacagaagggtgctggttctggtactcagcaaattattattgaaggt
cctctgtgtgaagattactataaaattcgtgattatctctattcacagttttatttgctt
tag
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