Trifolium pratense (red clover): 123907940
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Entry
123907940 CDS
T08949
Name
(RefSeq) AP-5 complex subunit zeta-1 isoform X1
KO
K19025
AP-5 complex subunit zeta-1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
123907940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123907940
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
123907940
SSDB
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Paralog
GFIT
Motif
Pfam:
SPG48
TPR_AP5Z1_C
Motif
Other DBs
NCBI-GeneID:
123907940
NCBI-ProteinID:
XP_045814375
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Position
LG2:complement(40621028..40630145)
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AA seq
572 aa
AA seq
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MSERDAGWDFHLRTLSISARDSNIANDPASDPSLLQSIKKLHELCKAENNEDLVARVYPQ
INKIFQRAVASLSQSQTSNGLLLLAILQFYLDFGEVVLHDADPSLRTFFRSCLSREFADP
VVAEAMLEFLILNKKRILTAFPNLMPQFFPLLLKLIAWNGERLEKQILKAFPGLMSPGSF
IPLFPSLLDLPILVVALEKVEKSSGPLIGSSIASIQKNTAPKMLLALMDEAYTGSTIEDG
GGDSEFEDSSAIDVSDPLFLEILKDENDGIAERPWSSPLMTTILQAAVNNPYSDRLKAVL
RLTPRLLDVYFSIALRDVNDSLICALVPLLLSRFATIFPDKIFSYEVHKRLLEFILATFQ
RYPNFIALLKNSLQKPIMGRLGEAYDSPDKTELALQLCWAIGEHGGGGGSHKDEARELFE
SLELLLYENLSSSRLGMAQEVSLSSDKDTYRRSSQSRLMCFVVTAIAKLATHHRELLPRA
RVSLGKVARSRISDMRVWRRACDYLGLMKDPAICSSILGPSRPSQGTTQKIGSINWSEGA
TKMIAHIPFYILGEQEGPPFHDFSFSDILSHR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagcgagacgcaggttgggattttcacctccgaacgctatctatcagtgccaga
gattccaacatcgccaacgatcctgcttccgatccatctcttcttcaatccatcaagaag
cttcatgaattatgcaaggctgagaacaacgaagatttggtagctagggtttatccgcag
attaataagatttttcagcgtgctgtggcttctctttctcaatctcaaacctccaatggt
cttcttttactcgcgattcttcagttttacctggactttggggaggttgttcttcatgat
gctgatcctagtctcaggacattttttcgttcctgcttgagcagggagtttgctgatcct
gtcgttgcagaagcaatgcttgaatttctcattcttaacaagaagaggattttaactgcc
ttccctaacttaatgcctcagttttttccattgttgttaaagctgatagcttggaatggt
gaaagattagagaaacaaattttgaaagcctttccaggattgatgtcacctgggtcattt
attccattgtttccatctttactagacttgcctattttggtcgtggcattggagaaggtt
gaaaaaagctctggaccactaattggaagcagcattgcttcaattcagaaaaatacagct
cctaagatgctacttgcccttatggatgaagcatatactggttcaactatagaagatggt
ggaggagattctgaatttgaggatagcagtgcaattgacgtgtctgatcctttgttcctc
gagatcttaaaggatgaaaatgatggtatcgctgaacggccctggtcatcaccattgatg
accacaatattacaggctgcagtcaataatccttactctgataggctgaaagcagtactc
cgccttacacctcgtctgcttgatgtatacttttctatagcattgcgcgatgtgaatgat
tctttgatctgtgcgttggttcccctgcttttgtcaagatttgcaacaatatttccagac
aaaatattctcttatgaggttcataagcggcttttggagtttatactcgccacatttcag
cgctacccaaacttcattgcccttttaaagaattcattgcagaaacctataatgggcaga
cttggagaagcttatgacagcccagacaagacagaattggcattgcaattatgttgggct
attggagagcatggtggtgggggtggatctcacaaagatgaagcccgtgaactttttgag
agtttagaactacttctgtatgaaaacctttcctcaagtcgtctgggcatggcacaggag
gtatcccttagttctgataaggatacctacagaaggtcctcacagtctaggcttatgtgt
tttgttgtgacagccattgcaaagcttgctacacatcatcgtgaattactacctagagca
cgtgtatctttgggcaaggttgctcggtctcgaatttctgatatgcgagtatggaggcgt
gcttgtgattacctgggtttgatgaaagatcctgctatatgttcatccatattagggcct
tcacgaccttcacaaggtaccacacagaaaattgggagcataaactggagtgaaggtgca
acaaagatgatcgcacatattccattttacattctaggtgaacaagaaggaccacctttt
catgatttttctttctcggatatcctttcccacagatga
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