Trifolium pratense (red clover): 123908250
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Entry
123908250 CDS
T08949
Name
(RefSeq) protein transport protein SEC16B homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123908250
Membrane trafficking [BR:
tpra04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
123908250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
123908250
NCBI-ProteinID:
XP_045814782
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All DBs
Position
LG2:40667222..40675718
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AA seq
1481 aa
AA seq
DB search
MASNPPFNMEDQTDEDFFDKLVEDDDDMGPVKSSHHDEGNDSDDAKAFANLSINDVDAAA
ATFENSDAGESGDEVKEELGIVKSDVSLVGGHDEQDGNSVMLSSSVEFDSKPDLSKEEIG
TGSELTAVPAVGENNDVNNDVASSGIKEKGWNAFHADANDATGFGSYSDFFSELGDQSGD
FPAISHDNLNSQASPVNEGQINGLNTSVDYLQYQQYQGVQGYDTSFVNHTDKQGDSLNTS
VNYVQHQEGVAYDASANQHSNGQDLSSSQNWEDLYPGWKYDHTTGQWYQIDGYNATATSQ
QTSEANAAVDWAAASDGKTEISYLQQTAQSAAGTLAETGTIESVSSWNQVSQANNGYPEH
MVFDPQYPGWYYDTIAQEWRSLETYNSSVQSSVHGLENGHTSTSTSFPLNDNNSLYSEYS
QTGNYGSQGVGSQAVNGTWSGSYGVNQQQGFDMYTTDATTKIGNNRASGGNQQVNHSYGS
NVSGSTDQVNTSSSFGSVPLYNKAHGLANGTFEPKTFIPREDISQQFNYSNTKFDEQKQF
SNVFAENQNSHSYSQQSIQGGHQYPYAPHAGRSSAGRPSHALVTFGFGGKLIIMKDPSAL
SASFGSQDSVQGSISVLNLMEAVTGSQNSSTVGNASGDYFRALGQQSFPGPLVGGSFGNK
ELYKWLDERIARCESPDMDYKKGERLRLLLSLLKIACQHYGKLRSPFGTDTILKENDAPE
SAVAKLFASAKVSGTEFTQYGMPSHCLQSFPSEEQMRAMASEVQHLLVSGKKMEALQCAQ
EGQLWGPALVLASQLGEQFYVDTVKQMALRQLVAGSPLRTLCLLIAGQPAEVFSTETSIS
GHPPSAFNMPQQSEQVGSNGMLDDWEENLAVITANRTKGDELVITHLGDCLWKEKKEITA
AHICYLVAEANFESYSDSARLCLIGADHWKCPRTYASPEAIQRTELYEYSKLLGNSQFVL
HSFQPYKLIYAYMLAEVGKVSDSLKYCQAVLKSLKTGRAPEVETWKQMVLSLEERIKTHQ
QGGYAANLAPAKLVGKLLNFFDSTAYRVVGGLPPPAPSSSQGTVPGSEQHYQHMAPRVST
SQSTMTMSSLVPSASMEPISEWTADNNRMAKPNRSVSEPDIGRTPRQETTSPDAQGKAQV
SGGASRISRFGFGSQLLQKTMGLVMRPRSGKQVSLIVVYSSVLFSLLSQLYYRVLIVPIH
LVHILLYRKAKLGEKNKFYYDEKLKRWVEEGAEIPAEEAALPPPPPTTAAFQNGSAEYNL
KSALKTEGLTPNEFSTTRTSSPELSPGMPPIPPSSNQFSARSRMGVRSRYVDTFNKNSGS
SPNLFHSPSVPSVKPALPANAKFFVPAPVPSSNEQNMEAIAESNLENSAANEDPSTSSTN
DWSYQSPKPAQTMPMQRFPSAGNISKQGQPDGNNSHFANSRRTASWSGSFNDSFSPPKMG
ENKPPGEALGMPPSTFMPNPSLMRPPMRSGSFGEDLQEVEL
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaatcctccattcaatatggaggatcagacggatgaggatttttttgataaa
cttgttgaggatgatgatgatatggggcctgttaaatctagtcatcatgatgaagggaat
gattccgatgatgcaaaagcgtttgcgaatctgagtataaatgatgttgatgctgctgct
gctacatttgagaattctgatgctggtgaaagtggggatgaagtcaaagaggaattgggt
attgtgaaatctgatgtgagtttggttggtggacatgatgagcaagatggaaattcggtg
atgttatctagttccgttgagtttgatagtaagccggatctcagtaaggaagaaattggg
acgggatccgagctcacggcagtgccggctgttggcgagaacaatgatgtaaacaatgat
gtcgctagttcagggattaaggagaagggttggaatgcttttcatgctgatgcaaatgat
gccactgggtttggatcatattctgactttttcagtgagttaggagatcaatccggggat
ttcccggcaatttcacacgataatttaaatagtcaggcgagtcctgttaatgaaggtcaa
attaatggcttaaatacttcggtggattacctgcaatatcagcaatatcaaggtgttcaa
ggttatgatacgtcttttgtaaatcacacggacaagcaaggtgacagcttaaatacttca
gtcaattatgtgcaacatcaagagggtgtagcttatgatgcatctgcaaaccaacacagt
aatggacaagatctgagtagtagtcagaattgggaggatctttatcctggctggaagtat
gaccataccactgggcaatggtatcaaatagatggctacaatgcaacagcaactagtcag
caaacctctgaagctaatgcagctgtagattgggctgctgcttctgatggaaaaacggag
atctcttatttgcaacaaactgcccagtctgctgctggaactttggcagaaacaggcaca
attgaaagtgtatctagctggaatcaagtttcacaagcaaataatgggtacccggaacat
atggtttttgatcctcaatatcctggttggtactatgacaccattgcccaagaatggcgc
tcattggaaacatacaattcatctgtccagtcttctgttcatggacttgaaaatgggcat
acttctaccagtacttccttcccccttaatgataataacagtttgtatagtgagtatagc
caaactggtaattatggatcacagggtgttggcagtcaggctgtaaatggtacctggagt
ggttcgtatggtgttaaccagcagcagggttttgacatgtacacgactgatgctaccact
aaaatagggaataatagagcttctggtggtaaccagcaagttaaccattcgtatggttca
aatgtgtctgggagcactgatcaagtaaatacttctagttcctttggatcagttccatta
tacaataaagctcatggtttggctaatggcacttttgagccaaaaacatttatccctcgt
gaggacattagtcaacagtttaattattcaaacacaaagtttgacgaacaaaaacaattc
tcaaatgtttttgctgaaaatcagaactcccatagttattctcagcaatcaatccagggt
ggacatcaatatccttatgcccctcatgctggaagatcatccgctggacgtccttctcat
gcccttgtaacatttggatttggtggaaaactcatcataatgaaagatccaagtgctttg
agtgcatcatttggaagccaggattctgtacaaggttctatttctgtgttgaacttgatg
gaagctgtcaccggaagccaaaattcttcgactgttggaaatgctagtggtgattatttt
cgcgctctaggccagcaatctttcccaggtccattggttggcggtagttttggaaataag
gaactctacaaatggttagatgagaggattgcacgctgtgagtcacctgatatggattat
aagaaaggtgaaaggttgagactcctcctctccttgcttaaaatagcttgtcagcattat
ggaaaactgcgttctccttttggtacagacaccatactaaaagaaaatgatgctcctgag
tcagcagttgcaaaactttttgcatctgccaaagtgagtggcacagagttcactcagtat
gggatgccaagtcattgcttgcaaagttttccttctgaagaacaaatgagggcaatggct
tctgaggtacaacatcttcttgtctctggcaaaaagatggaggctttacagtgtgcacaa
gaaggacaattgtggggacctgcacttgttcttgcttcacaacttggtgagcagttctat
gttgatacagtaaaacaaatggcacttcgccagttggttgcggggtcacctctgcgcaca
ttatgccttttaatcgctgggcaaccagcagaagtattctctactgaaacctcaattagt
gggcatcctcctagtgctttcaatatgcctcagcagtctgaacaggttggatctaatggt
atgcttgatgattgggaagaaaatttggctgtaataactgcaaacagaaccaaaggtgac
gaacttgtaattactcaccttggtgattgcttgtggaaggaaaaaaaggagattactgct
gcacacatctgctatttagttgctgaagcaaactttgagtcatactcggacagtgcaaga
ctttgcttaataggagcagatcactggaaatgtcctcgaacttacgctagtccagaagct
attcagagaaccgagttatatgaatactcaaagctgcttggaaattctcagtttgttttg
cattcgtttcaaccatataagcttatatatgcatatatgctagctgaagtgggaaaggtt
tcagactcattgaagtactgccaagcagtactaaaatccttgaaaactggccgtgctccg
gaagtagaaacgtggaaacagatggtattatctcttgaggagagaattaagacccaccaa
cagggtggatatgctgcaaatttagctcctgcaaaattagttggcaaattgctcaatttt
tttgatagcactgcatatcgagttgttggtggtttaccaccaccggctccatcatcttca
caaggaaccgttcctggaagtgaacaacattaccaacatatggcaccaagagtatccact
agccagtcaacaatgaccatgtcatctttagttccatctgcttcgatggaacccataagt
gagtggacagctgataacaatagaatggcaaagcctaacagaagtgtttcagagccagat
attggtagaaccccaagacaggaaacgacatcgcctgatgcacaaggaaaagctcaggta
tcagggggtgcatcacgcatttctcgttttggttttggctcacaacttctgcaaaaaaca
atggggctagtcatgagacctcgctctggaaaacaggtatcattaattgttgtatacagt
tctgttttattttctcttttatctcaattgtactaccgagttctgattgtgcccattcat
ttggttcatattctgctctatcgcaaggctaaattgggtgagaaaaacaagttctattat
gatgaaaagctgaagagatgggtggaagaaggtgctgaaattccagccgaagaagctgct
ctgccaccaccacctccgacaactgctgctttccagaatgggtcagctgagtacaacttg
aaatctgcattgaagacagaaggattgactccgaatgagttctcaaccacaagaacttca
agtcctgaacttagtccagggatgccaccaataccacctagctcaaatcaattctctgct
cgcagtcgcatgggtgttcgatcaagatatgttgacactttcaacaaaaatagtggaagc
tctccaaacttgtttcactccccctctgttccatctgtgaaacccgcccttcctgccaat
gcaaagttttttgttccagctcctgtaccatcatcgaatgagcagaacatggaggctatt
gccgaaagcaacctagaaaatagtgcagctaatgaagatccttctacatcttccacaaat
gattggtcataccaatctccgaaacctgcacaaacaatgcccatgcaaaggtttccaagt
gccggtaacatctcaaaacaggggcagccagatggcaataactctcattttgccaattct
cgtcgaacagcttcttggagcggaagttttaatgattcatttagccctccaaaaatgggt
gaaaataagcctccaggggaagctttgggcatgccgccatcaacatttatgcctaatcca
tcattaatgcgaccgcctatgagaagtggcagttttggtgaagatcttcaagaggttgaa
ctatga
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integrated database retrieval system
