Trifolium pratense (red clover): 123908584
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Entry
123908584 CDS
T08949
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123908584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123908584
Spliceosome [BR:
tpra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
123908584
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
123908584
NCBI-ProteinID:
XP_045815219
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Position
LG1:748684..754737
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AA seq
816 aa
AA seq
DB search
MDDRDKSDRRNRDRHSERDRDHKSHRSRHDSDDHRHHRSDRNAKHDHKTRDREDREGSRD
RDKVYDRDEREGSKGRSKLKRDEEMEDSVEPRHSSHSHKRKDREHSEDRELEDKRIRVSE
VKKERRKFGDKVKKEVYYDNEPKVEEEVTNGAHSNDNASPQNGVAVGSPAAVPASVPEST
LAPPPSFPIKVSSISTTNENKGVSITRSHEVTGKSSTDGSSSTAGKPGSLSIDALAKAKK
ALQKQKELSEKLKRIPQLNKSSTSNSQESTHLGSKTESAAPSLGVGVVTRPTISASLGPV
PNMSIFPAAANPPASGTSAAGVTTATNLEAVRRAQELAARMGFRHDPQFAPLINMFPSQI
VTPDVTNPPKPTKAPVLRLDAHGREIDEHGNVVNVTKPSNLSTLKVNINKQKKDAFEIQK
PVLDVDPDSNPHFDESIGINKTKLLRPKRMNFLFVEEGKWSKDAESIKLKSKFGEAQAKE
QKAKQAQLAKAKAAPDINPNLIEITERVVLKEKLKDPIPEIEWWDVALLHSGNYGDIANG
TVGEDKLKMEKITFYVEHPRPIEPPAEPAPPPPQPLKLTKQEQKKLRTQRRIAKEKERQE
MIRQGVIEPPKPKVKMSNLMKVLGTEATQDPTRLEKEVRNAAAEREQAHIDRNIARKLTP
AERSEKKERKLFGDPNTLDTLVLLYRINDLSHPKARFRVDVNAQVNRLSGCAVICDGISV
VVVEGCSKSIKRYGKLMLRRINWSDLSKEKEENEDSDDEKPPNKCVLVWQGSVAKPNFNR
FSVHDCVTEAAARKVFVDAGVPHYWDQAVNYDDGAA
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagagacaaatccgataggcgaaacagagatcgacactccgaacgtgaccgc
gaccacaagtctcatcggagccgtcacgattccgatgaccaccgccatcatcgatctgac
cggaatgccaaacacgaccacaaaaccagagacagagaagaccgagaaggaagcagagat
agggataaggtatacgatagggacgaaagagagggtagcaaaggtaggtctaaattgaag
cgcgatgaagagatggaagattcagtcgagccacgacactcttcgcattctcataagcgg
aaagatagggaacatagtgaggatcgtgaattggaagataagagaattagggtttctgaa
gtgaagaaggagcgtagaaaatttggtgataaagtgaagaaagaagtttattatgataat
gagcccaaggtcgaggaggaagttactaatggtgcccattccaatgacaatgcttcaccg
caaaacggtgttgctgtgggatcacctgctgcggtgcctgctagtgtgccggagtcaact
ttggcccctcctccttcctttcctatcaaggtatcatcgatttctaccacaaatgaaaat
aagggtgttagtattaccaggtctcatgaggttactggaaaatctagtacagatgggtca
tcttcaactgctggaaaacctggaagcctctctattgatgccttagctaaggcaaagaag
gctttacaaaagcagaaagagttgtcggagaagctgaagagaattcctcagttgaataag
agttctacctcaaattcgcaagaaagcacacatttgggttccaagactgaatctgcagcg
ccctctcttggtgtcggagtggtaacaagacctaccatctcagcttctttggggcctgtt
ccaaatatgtcaatctttcccgctgctgcaaatcctccagctagtggtactagtgctgct
ggtgtcacaactgcaaccaaccttgaagctgtcagacgtgctcaggagcttgctgccagg
atgggattccgtcatgatccacaatttgctcccctaatcaatatgtttcccagccagatt
gtaacaccagatgttactaaccctccgaaaccaaccaaggctcctgttcttcgtcttgac
gcccatggacgggaaatagatgaacatggaaatgttgttaatgtaactaagcctagcaac
cttagcacattaaaggtcaacattaataaacagaagaaagatgcatttgaaatacaaaaa
cctgtgttggatgttgatcctgattctaaccctcattttgacgagagtattggcatcaac
aaaacaaagctcctgcgccccaagaggatgaattttctgtttgtggaggaaggaaaatgg
tcaaaagatgctgaatcaataaagttgaagagtaaatttggggaagctcaagcaaaagag
cagaaggccaaacaagcacagctagcaaaggcaaaagctgctcctgatataaatccgaac
ttaatagaaattacagagagagttgtattgaaagaaaagctgaaggacccaattccagaa
attgagtggtgggacgtggcacttctgcattctggaaattatggtgatattgccaacgga
actgtaggcgaagacaaattgaaaatggaaaaaatcaccttttatgtggagcatcctcgt
cccattgaaccgcctgctgagcctgcccctccaccacctcaacctctcaagctaaccaaa
caggagcagaagaaactcaggacccaaaggcgtatagctaaggagaaggagcgacaagag
atgattagacagggagtcatagaaccgccaaaaccgaaggtcaagatgagcaatttaatg
aaagtgctggggactgaagcaactcaagatcccactcggcttgaaaaggaagtgcgtaat
gcagctgctgagcgtgagcaggctcacattgataggaatattgcacgcaagcttactcct
gctgagcggagcgagaagaaggaaaggaagctgtttggtgacccaaatacactggataca
cttgtcttactttacaggataaatgacctctctcatccaaaggcccgctttagagttgat
gttaatgctcaagtaaatcgtttgtctggatgtgctgtgatttgtgatggtattagcgtt
gtcgtggttgaaggttgtagcaagtcaattaagaggtatgggaaactaatgcttagacgt
atcaattggagtgatctttcaaaagagaaagaagaaaacgaagattcagatgatgagaag
cctcccaataaatgtgttctggtgtggcaaggaagtgttgccaaaccgaatttcaatagg
ttcagtgttcatgattgcgtcactgaagcggctgctcgtaaagtttttgtggatgctggg
gttcctcattattgggaccaagctgtcaactacgatgacggtgctgcttga
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