Trifolium pratense (red clover): 123908717
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Entry
123908717 CDS
T08949
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
123908717
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Motif
Pfam:
FAD_binding_7
Cryptochrome_C
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
123908717
NCBI-ProteinID:
XP_045815391
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Position
LG2:67366876..67373039
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AA seq
681 aa
AA seq
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MSSGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSL
SHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILT
AHGITVRSFNSDLLYEPWDVNDEHGQPFTTFDAFWERCLSMPYDPQAPLLPPKRIISGDV
SRCPSDTLVFEDESEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT
SFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNQAGEESVNLFLKSIGLREYSRYISFNH
PYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCD
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEA
LIQMWRLEAASRTAAENGTEEGLGDSSESAPIAFPQDIQMEERPEPVRNNPLHGTRRYQD
QMVPSMTSSRVRVEEEETSSVRNSAGDSRAEVPTNANAQQNAREAVNQGVLHNANRNTRQ
RHNNTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPPTSNFSDQFVDDENGIGATSP
YLQRHPQSHQLMSWTRLPQTG
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtggtggatgtagcatagtatggttcagaagagatctgagggttgaagataac
cctgcacttgctgcaggtgttagagcaggagctgtggttggtgtttttatatgggcacct
gaagaagaaggtcaatattatcctggtagagtttcaagatggtggcttaaaaatagtttg
tctcatcttgattcatctttgagaaatcttggtactcctcttgttactaaaagatcaact
gatagtgtttcttctttacttgaagttgtcaagtccactggagccactcaaatctttttc
aaccatttatatgatccattgtcacttgtgagggatcatagagcaaaggaaattctaaca
gcacatggcattaccgtacgttctttcaactcggatttattgtatgaaccatgggatgtg
aatgatgaacatggacaaccattcacaacttttgatgctttttgggaaagatgccttagc
atgccttatgacccacaagcacctcttctcccacctaaaagaattatttcaggtgatgtg
tcaaggtgtccttctgatacattggtgtttgaagatgaatcagagaaagcaagcaacgca
cttctagctcgagcgtggtcaccaggatggagtaacgcaaacaaggcattaacaacattt
ataaacggtccattgattgaatactcaaagaatcgcaggaaagcagacagtgccacaacc
tcatttctctctccgcatttgcatttcggagaagttagtgtcaagaaagtgttccatctt
gtcagaattaagcaagtcttttgggcaaacgaaggaaaccaagccggcgaagaaagtgtt
aacttgtttctcaagtcaattggtcttagagagtattcaaggtacattagtttcaaccac
ccttatagtcatgaaaggcctctacttggacatctgaagtttttcccttgggtggtgaat
gaaggatattttaaggcatggagacaaggaaggacaggttaccctttggtggatgctgga
atgagagagttgtgggctaccggttggcttcacgatcgaatacgtgttgtggtttcgagt
ttctttgtgaaggttttgcagcttccttggagatgggggatgaaatatttttgggatacc
cttttggatgctgatcttgagagtgatgctcttggttggcagtatatatctggtactcta
cctgatggtcgcgaatttgacagaattgataatccacagtttgagggatacaaatgtgat
ccaaatggagaatatgtgcgacgctggctacctgaacttgcaagattaccaaccgaatgg
atacatcatccatggaatgcaccagaatcagtactccaagctgcaggtattgaacttgga
tcaaattaccctcttccaattgtggaaatagatgcagcaacagtgagactggaagaagca
cttatacaaatgtggcgactagaagctgcttcaagaactgcagcagaaaacggaactgaa
gaaggtcttggtgactcatctgaatcagctcctattgcttttcctcaagacatacaaatg
gaagaaagacctgaacctgttaggaacaatccacttcatggtactcggcgctaccaggat
caaatggtaccaagtatgacttcatctagggtgagagtcgaagaggaagaaacttcttca
gttcgaaactcggcaggagacagcagagctgaagtgccaacaaatgcaaatgcacagcaa
aatgcaagagaggcggtgaaccaaggagtgttgcacaatgcaaatagaaacactagacaa
aggcataataatacaactacattttggctgagaaatgcagctgaggattcaacagcagaa
tcttcaagtagtactaggagagaaagagatggaggtgtagttccggagtggtcaccaccg
acttctaacttctcagatcaatttgtagatgatgaaaatggtataggcgccacttcacct
tacttgcagaggcatccgcaatctcaccaattgatgagttggacacggctacctcaaact
ggatga
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