KEGG   Trifolium pratense (red clover): 123909142
Entry
123909142         CDS       T08949                                 
Name
(RefSeq) protein SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    123909142
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123909142
   04131 Membrane trafficking [BR:tpra04131]
    123909142
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     123909142
Membrane trafficking [BR:tpra04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    123909142
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR5 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_Prp19 EIF3I Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_EML_2 Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N WDR55 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st DSE1_N Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 123909142
NCBI-ProteinID: XP_045815869
LinkDB
Position
LG2:58780380..58785708
AA seq 328 aa
MAKELLSLDNGTICSSWNYSDTRLATGSIDGTLSIFDLRDSTSSTSNSLRSTFKTKVREG
NIVKIVWLLPEYGDAVACISADGIVSLLEEIVEDSKPLQWKLCKTFGSSASKVLDVQFGI
SLSRLKMVAAYSDGHVRVFELLDPLELTNWQLQAEFQNVIESVSSFGKALSLSASISLNP
QKGGSQESSFLVGFNSNTPELNSSKVWEFDQAHQRWLPVAELALSEDKGDQVYAVAWAPN
IGRPYEIIAVATHKGLSIWHLGLNPDHTGRLSVERVALLSGHEGAVWQMEWDMSGMTLAT
TGDDGMVRLWQSNLNGVWHQQAAFEPTS
NT seq 987 nt   +upstreamnt  +downstreamnt
atggcgaaggaattgttgagccttgataatggcacaatctgttcttcatggaattactct
gacacaagactcgctacaggttccatcgatggcactctttcgatattcgatttgagagat
tcaacttcttctacttctaactctcttcgctctactttcaaaaccaaggttcgtgaagga
aacattgtgaagatagtatggcttctgccggagtatggtgatgcggttgcatgtatttcc
gccgatggaattgtttctttgttggaagagattgttgaagattcaaagcctcttcagtgg
aagctatgcaaaaccttcggaagcagtgcgagtaaagtccttgatgttcaatttggaatc
tctttgtctcgtttgaaaatggttgctgcatattcagatggtcatgtgagagtttttgag
ctcttggatcccttggaactgactaactggcagcttcaggctgaatttcaaaatgttatt
gaatcagtgtcttcgtttggaaaggcgttgtccctctctgcgtcgatatctttgaatcca
caaaagggcggaagccaggaatccagcttccttgtaggtttcaattcaaatacaccagag
cttaattcttccaaggtatgggagtttgaccaggctcatcaaagatggcttcccgtggca
gaattagcattatctgaagacaagggtgatcaggtgtatgctgtcgcatgggcaccaaat
attggcagaccatatgagatcattgccgttgcaacacacaagggactttcaatatggcac
ctaggattgaatccagatcatactgggagactttcagtagaaagagttgcactgttatct
ggtcatgaaggcgcggtgtggcaaatggagtgggatatgagtggaatgacgttggctact
actggtgacgatggaatggtccgattatggcagtctaatctcaacggcgtttggcatcaa
caagctgcatttgaacctacttcttag

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