Trifolium pratense (red clover): 123909178
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Entry
123909178 CDS
T08949
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
tpra04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123909178
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
123909178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123909178
04121 Ubiquitin system [BR:
tpra04121
]
123909178
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123909178
Enzymes [BR:
tpra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123909178
Spliceosome [BR:
tpra03041
]
Complex B
Other components
Prp19 complex
123909178
Complex C
Prp19-CDC5 complex
123909178
Ubiquitin system [BR:
tpra04121
]
Ubiquitin ligases (E3)
U-box type E3
123909178
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
123909178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_DCAF12
PEP5_VPS11_N
Ge1_WD40
U-box
zf-Nse
WD40_like
PAS_11
Beta-prop_IFT140_2nd
Beta-prop_WDR75_2nd
PUMA_CC
KNTC1_N
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
123909178
NCBI-ProteinID:
XP_045815915
LinkDB
All DBs
Position
LG1:29986158..29994492
Genome browser
AA seq
525 aa
AA seq
DB search
MNCSISGEVPEEPVVSKGSGLLFEKRLIERHIADYGKCPVTGEPLTLDDIVPIKTGKIVK
PRPVQAASIPGMIGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSILAQAERQFPISTPNDATANAPVHSNGKRAADDEELAPNAKKLHPGISSSIIT
ELTNCNVALSQQRKKRQISATLAPIDAIETYTQISSHPLNKTNRQGIISLDILYSKDLIA
TGNVDTNAVIFDRPSGQVLATLSGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGR
YTCRQTLKDHSAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDSSEGYTSAA
FHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHQGHVTAISFSENGYYLATAAHDGVKL
WDLRKLKNFRNFAPYDKETPTNSVEFDHSGSYLAVGGSDVRIYQVANVKSEWNLIKTFPD
LSGTGKSTCVKFGPDSKYLAVASMDRNLRIFGQPGEDIPAASCAP
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctccatttccggtgaggttccggaagagcctgtggtgtcaaaaggctccggt
cttctctttgagaagaggttaatcgagagacatattgcggattatgggaagtgtccagtt
actggagaaccacttactttggatgacattgtaccaatcaaaacaggcaagattgtgaag
cctagaccagtgcaggcagctagcattcctggcatgatcgggatgttccaaaatgaatgg
gatgggttgatgctatctaattttgcattggagcagcaattgcatacagcaaggcaagag
ttaagtcatgctctatatcagcatgatgctgcttgccgtgtgattgcaagacttaaaaag
gaacgagacgaagctaggtctatacttgcacaggcagaaaggcagttcccgatttctaca
ccaaatgatgcgactgcaaatgctcctgttcatagcaatgggaaaagagctgctgatgat
gaggagctagcacctaatgcgaagaaattacatcctggaatttcttctagcataattact
gagctaacaaactgtaatgttgctctttcacagcagaggaaaaagcgacagatttctgcg
actttggcccctattgatgctatagagacatatacccagatatctagtcatcccttaaac
aaaacaaacagacaaggcattatatctcttgatatcctttattctaaggacttgattgca
actggaaatgttgatacaaatgctgttatttttgaccgtccatcagggcaagtattagct
acactcagcggtcactctaaaaaggtaaccagcgtgaagtttgtaggtcagggcgaatct
atcattactggttcagcagataagacagttcgtttgtggcaagggtcagatgatggtcgc
tatacctgcagacagaccttgaaagatcattcggctgaggtgcaagctgtcactgtccat
gccaccaataattactttgtgactgcatcacttgatggcacttggtgcttttatgaactg
tcttcagggacttgtctgacccaggtttcggactcttccgaaggctatacatctgcagct
tttcatcctgatggtcttattcttggaactggcactacagattctcttgttaagatctgg
gatgttaaaagtcaggcaaatgttgctaaatttgatggacaccaggggcatgtgactgca
atatccttttctgagaatggttactaccttgcgactgcagctcatgacggtgtaaagctt
tgggatctacgcaagttgaaaaacttccggaattttgccccatatgacaaagaaactcca
acaaactctgtggagtttgaccacagtggatcctaccttgcagttggaggctcggatgta
aggatataccaagttgcaaatgtgaaatctgaatggaacttgatcaaaacttttcccgat
ttatctggaacagggaaatccacatgtgtaaaatttggcccagattcaaaatacttagca
gttgcatcaatggaccggaatcttagaatattcggccaacctggtgaagatatacctgcc
gcaagttgtgctccatag
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