Trifolium pratense (red clover): 123909190
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Entry
123909190 CDS
T08949
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03030
DNA replication
tpra03410
Base excision repair
tpra03420
Nucleotide excision repair
tpra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123909190
03410 Base excision repair
123909190
03420 Nucleotide excision repair
123909190
03430 Mismatch repair
123909190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpra03032
]
123909190
03036 Chromosome and associated proteins [BR:
tpra03036
]
123909190
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123909190
DNA replication proteins [BR:
tpra03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
123909190
DNA Replication Termination Factors
ELG1-RFC complex
123909190
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
123909190
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
123909190
Check point factors
HRAD17(Rad24)-RFC complex
123909190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
AAA_16
RuvB_N
Mg_chelatase
AAA_24
ADK
AAA_5
AAA_11
AAA_14
SLFN-g3_helicase
DUF3802
ResIII
AAA_assoc_2
AAA_2
nSTAND3
AAA_28
PhoH
AAA_19
AAA_30
AAA_7
AAA_25
NPHP3_N
ATPase_2
RNA_helicase
TIP49
AAA_18
Parvo_NS1
DNAX_ATPase_lid
DUF815
NB-ARC
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
123909190
NCBI-ProteinID:
XP_045815931
LinkDB
All DBs
Position
LG2:complement(55821305..55826023)
Genome browser
AA seq
342 aa
AA seq
DB search
MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNRPKNGYPCPPYKIIV
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMS
NRILYICKEEGIHLDAEGLSTLSTISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIV
PAEVVEALLNACKSGNFDLANNEVNNFIAEGYPVSQMLTQLFEAIVEEKDISDEQKARIS
KKLGEADKCLVDGADEYLQLLAVVSNTIQALCNMPEGFAYES
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaatcatccagagtactcaaccatgggtcgagaaatatcgtccaaagcaagtg
aaagacgttgctcaccaagaagaagtagttcgagttctcaccaacactctcgaaaccgga
agctgccctcacatgctcttctatggtcctcccggcactggaaaaaccactactgccctc
gctatcgctcatcagcttttcgggcctgagctatataagtctagggttttggaactaaat
gctagtgatgatcgtggtattaatgttgttcggactaagatcaaagattttgcagctgtg
gccgtcggcaccaatcggcccaagaatggttatccttgtccgccgtataagataattgtt
ctggacgaggcagattcaatgacagaagatgctcagaatgcactgaggcgtacaatggaa
acttactctaaagttactaggttcttttttatatgcaactacattagcaggattatagaa
ccacttgcttcaaggtgtgcaaaattcaggtttaagccgctgacagaagaaatcatgagc
aaccgaatattatacatctgcaaagaagaaggaatccaccttgatgctgagggtctttca
accctaagtactatttctcaaggagatcttcgtcgggctataacatacttgcagtctgct
gctcgcttatttggatcttccatttcttcgaaggacctgatttctgtgtctgggattgtt
ccagcagaagttgttgaggcacttcttaatgcttgcaaaagtggtaattttgatttagcc
aacaacgaagtcaacaatttcattgcagaggggtatccagtctctcagatgctaactcag
ttgtttgaggctattgttgaagaaaaggacatatcagatgaacagaaggcaagaatatcc
aagaagctgggtgaagcagataagtgtctagttgatggtgctgatgaatatttgcagctt
cttgctgttgtcagcaatacaatacaagctttatgtaacatgccagaaggatttgcttac
gagagttaa
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