KEGG   Trifolium pratense (red clover): 123909190
Entry
123909190         CDS       T08949                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03030  DNA replication
tpra03410  Base excision repair
tpra03420  Nucleotide excision repair
tpra03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    123909190
   03410 Base excision repair
    123909190
   03420 Nucleotide excision repair
    123909190
   03430 Mismatch repair
    123909190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tpra03032]
    123909190
   03036 Chromosome and associated proteins [BR:tpra03036]
    123909190
   03400 DNA repair and recombination proteins [BR:tpra03400]
    123909190
DNA replication proteins [BR:tpra03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    123909190
  DNA Replication Termination Factors
   ELG1-RFC complex
    123909190
Chromosome and associated proteins [BR:tpra03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    123909190
DNA repair and recombination proteins [BR:tpra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     123909190
  Check point factors
   HRAD17(Rad24)-RFC complex
    123909190
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 AAA_16 RuvB_N Mg_chelatase AAA_24 ADK AAA_5 AAA_11 AAA_14 SLFN-g3_helicase DUF3802 ResIII AAA_assoc_2 AAA_2 nSTAND3 AAA_28 PhoH AAA_19 AAA_30 AAA_7 AAA_25 NPHP3_N ATPase_2 RNA_helicase TIP49 AAA_18 Parvo_NS1 DNAX_ATPase_lid DUF815 NB-ARC IstB_IS21
Other DBs
NCBI-GeneID: 123909190
NCBI-ProteinID: XP_045815931
LinkDB
Position
LG2:complement(55821305..55826023)
AA seq 342 aa
MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNRPKNGYPCPPYKIIV
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMS
NRILYICKEEGIHLDAEGLSTLSTISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIV
PAEVVEALLNACKSGNFDLANNEVNNFIAEGYPVSQMLTQLFEAIVEEKDISDEQKARIS
KKLGEADKCLVDGADEYLQLLAVVSNTIQALCNMPEGFAYES
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggcgccaatcatccagagtactcaaccatgggtcgagaaatatcgtccaaagcaagtg
aaagacgttgctcaccaagaagaagtagttcgagttctcaccaacactctcgaaaccgga
agctgccctcacatgctcttctatggtcctcccggcactggaaaaaccactactgccctc
gctatcgctcatcagcttttcgggcctgagctatataagtctagggttttggaactaaat
gctagtgatgatcgtggtattaatgttgttcggactaagatcaaagattttgcagctgtg
gccgtcggcaccaatcggcccaagaatggttatccttgtccgccgtataagataattgtt
ctggacgaggcagattcaatgacagaagatgctcagaatgcactgaggcgtacaatggaa
acttactctaaagttactaggttcttttttatatgcaactacattagcaggattatagaa
ccacttgcttcaaggtgtgcaaaattcaggtttaagccgctgacagaagaaatcatgagc
aaccgaatattatacatctgcaaagaagaaggaatccaccttgatgctgagggtctttca
accctaagtactatttctcaaggagatcttcgtcgggctataacatacttgcagtctgct
gctcgcttatttggatcttccatttcttcgaaggacctgatttctgtgtctgggattgtt
ccagcagaagttgttgaggcacttcttaatgcttgcaaaagtggtaattttgatttagcc
aacaacgaagtcaacaatttcattgcagaggggtatccagtctctcagatgctaactcag
ttgtttgaggctattgttgaagaaaaggacatatcagatgaacagaaggcaagaatatcc
aagaagctgggtgaagcagataagtgtctagttgatggtgctgatgaatatttgcagctt
cttgctgttgtcagcaatacaatacaagctttatgtaacatgccagaaggatttgcttac
gagagttaa

DBGET integrated database retrieval system