Trifolium pratense (red clover): 123910679
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Entry
123910679 CDS
T08949
Name
(RefSeq) pinin-like isoform X1
KO
K13114
pinin
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123910679
03015 mRNA surveillance pathway
123910679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123910679
03041 Spliceosome [BR:
tpra03041
]
123910679
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123910679
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123910679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Patatin
Motif
Other DBs
NCBI-GeneID:
123910679
NCBI-ProteinID:
XP_045817818
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Position
LG2:complement(33704825..33709552)
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AA seq
430 aa
AA seq
DB search
MASTVAAAEKTEQELRNEIDELLRQQREINERLRDPRGLRKGALSAPINRNNSIRQRPFI
RPGGDNHDSEDQPPAKRRLSSAVVKVGDGELPEDADAGNIKDSTSEGVNGNSTFAQSDGN
HFNSHQSGMSRRDGYQRNSKVVNASEVPTTEHVPRVLPKNQDPSLVNRNKRMLGQLLGTL
EKFRKEDKQLSGTEAFMRRSNSLQRAEQKAREESERLRKEEREQIAEKRRRDLTLRARVA
AKTEEKKLELLFLRWSEHHKRLSNFIRTKAEPPIYYLPKKPLDEDAASIEKRKEEDFLEW
KNARREELSEYQKQIGDQYLANVEKDLERWQNARNARKVNNDHNLQETMDKELDTHRLEH
GPKKRKIPDGNNNEDDEEDDDVEDINVAEDDMIDDELDDDSGRRIDETIKMEMSNTTADP
AADADNIDLN
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtacggtggcggcggcggagaaaaccgaacaagaactccgtaacgagatcgat
gagcttcttcgtcaacaacgcgagataaatgagaggcttcgagatcctcgtggccttcgc
aaaggtgctttatcggctcctattaaccgcaataattctattcgccaacgtccttttatt
cgtcctggaggagataatcatgattctgaagatcaacctcctgctaaacgtcgactttca
tctgctgttgttaaggttggtgatggggagttgcctgaagatgctgatgctggaaacata
aaggattcaactagcgaaggtgtaaatgggaactctacctttgctcagagtgatgggaac
cattttaattctcaccaaagtggaatgtctagaagagacggctatcaaagaaattcgaag
gtggtaaatgcttccgaggttcccactacagaacatgttccaagggtattgcccaagaac
caggatccaagcttggttaatagaaacaaaagaatgctgggtcagcttttgggaactctg
gagaaattcagaaaggaagataagcaactctcaggaacagaggcattcatgcgaagatcc
aattctttgcagagagctgagcaaaaagcacgggaagaaagtgaaaggctcaggaaagaa
gaacgtgaacagattgctgaaaaacggaggagggatttgactcttagagcacgtgtggct
gctaagacagaagaaaagaaattggagttactgtttcttcggtggagtgagcatcataaa
agactaagcaattttataaggactaaagcagaaccgccaatctactatttgcctaaaaag
cccttggatgaagatgctgcgtcaattgagaagcgcaaagaggaggatttccttgaatgg
aagaatgcaagaagagaggaattgtctgagtatcaaaagcaaatcggggaccaatatctt
gctaatgttgaaaaggatttggagagatggcagaatgcaaggaatgcaagaaaagtaaac
aacgaccataatttacaagaaactatggacaaagaattggatactcataggctcgagcat
ggtcccaagaaaaggaaaatccctgatggaaacaataacgaagatgatgaggaagatgat
gatgtggaagatataaatgttgcagaggatgatatgatagatgatgaattagatgatgat
tctggtaggaggattgatgaaacaattaagatggaaatgagcaataccactgcagatcct
gctgctgatgctgataatatagacctaaactga
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