Trifolium pratense (red clover): 123911055
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Entry
123911055 CDS
T08949
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123911055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123911055
03009 Ribosome biogenesis [BR:
tpra03009
]
123911055
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123911055
Spliceosome [BR:
tpra03041
]
Complex A
U2 snRNP components
U2 related factors
123911055
Complex B
123911055
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123911055
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
Helicases
123911055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
AAA_7
ResIII
AAA_14
Scramblase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
123911055
NCBI-ProteinID:
XP_045818342
LinkDB
All DBs
Position
LG1:complement(13785729..13790738)
Genome browser
AA seq
1045 aa
AA seq
DB search
MVKSNGNNLINHWNGKPYSQRYYDILEKRKILPIWHHKDDFLQRLKNNQTLILVGETGCG
KTTQIPQFVLEALDLENKMMIACTQPRRFAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS
SAKTALKYLTDDMLLREAMMDPLLKRYKVIILDEAHERTVATDVLFGVLKEVLKNRTDLK
LVVMSAMIEAEVEKIKGFFFGASLMKVPGRLHPVEIFYTREPERDYMEAAIRTVVQIHMS
EPAGDILVFLTGEEEVEDACSRISKEVANLGDQDQVGPVKVVPLYSTLTPAMLQKIFEPA
PPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFVKQKVYNPRVCVESLLVSPISK
ATARQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEIYKSNLANTVLTLKKLGIDDLI
HFDFIDPPAPESFMRALEVLNYLGAVDDEGNLTKLGEIMSEFPLDPQMAKMLVVSPEFNC
SNEILSISAMLSVPNCFIRPRDAQKAADEAKARFGHIDGDHLMLLNVYHAYKQNNEDASW
CYDNFINNRALKSADNVRQQLVRIMARFNFKLCSTDFNSHDYYVNIRKAMLAGYFMQVAH
LERTRYYLTVKNNQEVHLHPSNCLDHKPEWVIYNECVLTSRNYISTVTNICGEWLVDIAP
HYYDLSNFPQCEAKRVLEKLYKKREKEKDDKLNPVKGVQELKSQQKIGLEVSKDLDSITV
ENVEELKPGKEAEVKVSKDLGSIRVKNVEELKAGKEADMVSKDPGSITVKNADELKPGKE
EELKVSEDHLTTVKNAEALKPERERELEVSKDMVIKTVKNVQELKAGKEAEIVSKDLGSI
RVNNADELKPGNEAEMKVSKDHLTTVKNTEALKPEIERELEVSKDTVIKTVKNVEELKAG
KEADMVSKDSGSIRVKNADELKPGNEAEMKVSKDHLTTVKNAEALKPEIERELEVSKDTV
IKTVKNVEELKPEKEAESRVSKGIEELKLLEAIEEMKLKLDGLESKLNEADFINKSPRKV
QVGFPLLYVCMVALICVVLGYRLHS
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaatccaacggcaacaatctcattaaccactggaacggtaaaccctactctcaa
aggtactacgatattctagaaaagaggaaaatccttcccatttggcaccacaaagatgat
ttcttgcagcgtttgaagaataatcaaactttgattctcgttggtgaaactggttgtggt
aaaaccactcagattcctcaatttgttttggaagctcttgatttagagaataagatgatg
attgcatgcactcagcctcgtagatttgctgcaatgtctgtttcacgccgtgtggcggaa
gagatggatgtaactattggggaagaagttggttatagcattaggtttgaagattgtagt
agcgcaaagacagctttgaagtatctaactgatgatatgcttttgagagaagcaatgatg
gatccacttttgaagcgatacaaagtaattattctagatgaggcacacgaaaggactgtg
gctactgatgtgctgtttggtgttcttaaggaagttcttaaaaacagaactgacttgaag
ttggtggttatgagtgcaatgattgaagctgaagttgaaaagattaagggattttttttt
ggtgcctctcttatgaaagttcctggaaggttacatccggtggaaattttttatactcga
gaacccgaaagggattacatggaggctgctattaggacagtggtgcagattcacatgtct
gaacctgctggagacatacttgtttttcttacgggagaggaggaggtagaagatgcatgc
agcagaatatcgaaagaagttgcaaatttgggggatcaggatcaggttggccctgtgaaa
gtagtaccgttgtattctactcttacgccggctatgctgcagaagatatttgagccagct
ccgcctccagttaaggagggaggcccccctggaaggaagattgtggtgtcaacaaacata
gcagaaacttcgttgacaattgatggtatagtctatgtcattgaccctggatttgttaag
caaaaggtttataaccctcgagtttgtgttgagtctttgttggtgtctccaatatcaaag
gctactgctcgccagagatctgggcgtgctggaagaactcaaccagggaaatgctttaga
ctttataccgaaagaagtttcaacaatgatcttcaaccacagacatatcctgaaatttat
aaatctaatcttgccaacacggttcttacattgaagaaactgggtatagatgatttaatt
cattttgacttcatagaccctcctgcacctgaatcgtttatgcgtgctttggaagtgttg
aattacttgggtgcagtggatgatgaaggcaacttaacaaaattgggtgagattatgagc
gagtttccattggaccctcagatggcaaagatgcttgttgttagtcctgaattcaactgt
tcaaacgagattctttcaatttcagccatgttatcagtacccaattgctttatccggcct
agggatgcacaaaaagctgcggatgaagcgaaagctaggtttggacacattgatggagat
catctaatgctcttgaatgtatatcatgcctacaagcaaaacaatgaggatgcttcttgg
tgctatgacaacttcattaataatagagcgctcaaatcagctgataatgttcgacaacaa
cttgttcgtatcatggctaggtttaacttcaagttatgcagcacagacttcaatagtcac
gactactacgtcaacattagaaaggcaatgctagcaggatatttcatgcaggtggctcat
cttgagcggacaagatactacttgacagtgaaaaacaaccaggaggtacacttgcatcca
tcaaattgcctggatcacaagcctgagtgggttatctataatgaatgtgttcttaccagt
cggaattatataagtactgtgacaaatatatgcggtgaatggttagttgatatagcaccg
cattactatgatttgtctaatttcccacaatgtgaagcaaagcgtgttcttgaaaagctt
tacaagaaacgagagaaagaaaaagatgacaagttaaacccagtgaagggtgtacaggaa
ctgaagtcacagcaaaaaatagggttagaagtgtcaaaagatctggattcaatcacagta
gagaatgtagaggaactgaaaccaggaaaagaagcagaggtgaaggtgtcaaaagatctg
ggttcaatcagagtaaagaatgtagaggaactgaaagcaggaaaagaagcagatatggtg
tcaaaagatccgggttcaatcacagtaaaaaatgcagatgaactgaaaccaggaaaagaa
gaagagctgaaggtatcagaagatcatctgaccacagtaaaaaatgcagaggcactgaaa
ccagaaagagaaagagaactagaagtttcaaaagatatggtgattaagacagtaaagaat
gttcaggaactgaaagcaggaaaagaagcagagattgtgtcaaaagatctgggttcaatc
agagtaaacaatgcagatgaactgaaaccaggaaatgaagcagagatgaaggtgtcaaaa
gatcatttgaccacagtaaaaaatacagaggcactgaaaccagaaatagaaagagaacta
gaagtttcaaaagatacggtgattaagacagtaaagaatgttgaggaactgaaagcagga
aaagaagcagatatggtgtcaaaagattcgggttcaatcagagtaaagaatgcagatgaa
ctgaaaccaggaaatgaagcagagatgaaggtgtcaaaagatcatttgaccacagtaaaa
aatgcagaggcactgaaaccagaaatagaaagagaactagaagtttcaaaagatacggtg
attaagacagtaaagaatgttgaggaactgaagccagaaaaagaagccgagtcaagagtt
tcaaagggtattgaggagctgaaactgctggaagccattgaagagatgaagttaaaacta
gatggacttgaatcaaagctaaatgaggctgattttattaacaagagtccaagaaaagtt
caagttgggttcccacttctctatgtctgtatggtggcacttatctgtgttgttttggga
taccgtttacactcttga
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