KEGG   Trifolium pratense (red clover): 123911148
Entry
123911148         CDS       T08949                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123911148
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tpra03041]
    123911148
   03036 Chromosome and associated proteins [BR:tpra03036]
    123911148
Spliceosome [BR:tpra03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    123911148
 Complex B
    123911148
 Complex C
   U2 SnRNP specific factors
    123911148
Chromosome and associated proteins [BR:tpra03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    123911148
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_ECM29 Htt_N-HEAT_1 HEAT_EF3_N HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd UME Adaptin_N
Other DBs
NCBI-GeneID: 123911148
NCBI-ProteinID: XP_045818459
LinkDB
Position
LG2:complement(30712393..30717696)
AA seq 1267 aa
MSSNDDEIRKTQEDRKKMEQELASLTALTFDTDLYGASDRSSYLTSIPASEDAENLEADN
EFSRRLPSYTGPKSIMREIPSAENDAGDSSLPQSRRIIDREDDYRKRRLNQILSPDRHDP
FAAGEKTPDPSVRTYAEIMRDEALKREFDETKRAIAKKKKEEEENAKAAPEKNQSQSQSQ
QVNNQQKRRNRWDQSQDEGGANAKKAKTSDWDAPESMTPGRWDATPTPGRVIDATPGRRN
RWDETPTPGRLVDSDATPGGVTPGATPGATAWDATPKLPGMATPTPKRQRSRWDETPATM
GSATPLPGATPAAGYTPGVTPVGGVELATPTPGALQGSFTPEQYNLLRWERDIEERNRPL
TDEELDAMFPQEGYKVLDPPASYVPIRTPARKLLATPTPLGTPLYQIPEENRGQQYDVPK
EAPGGLPFMKPEDYQYFGALLNEENEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQ
LTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVI
EPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASA
LGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDEN
QKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRQHRGKVLAAFLKAIGFIIPLME
ALYASYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRTDILPEFFRNF
WVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVTN
LGSSDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIK
WRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGAL
KSIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMR
ICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIA
IVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL
MDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGM
RVALGSAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPSLEDEHNNVYSR
SELMMFI
NT seq 3804 nt   +upstreamnt  +downstreamnt
atgtcgtcgaacgatgacgaaattaggaaaacgcaagaagaccgaaagaagatggaacaa
gaactcgcttcactcactgcactcaccttcgatactgatctctatggcgcaagcgataga
tcttcatatctcacttcaattccggcgagcgaagatgctgaaaatctcgaagccgataac
gagttttctcgccgacttccttcatacactggtcctaaatctatcatgagagaaattcct
tccgccgaaaacgatgctggagattcgagtttacctcagtcgcggcgaataattgatcgt
gaagatgattatcgtaagcgtaggttgaatcagattctttctccggatagacatgatcct
tttgctgctggagagaagacgccggatccatctgtgaggacttatgctgaaattatgagg
gatgaagcgttgaagagagagttcgatgaaacgaagagggcgattgccaagaagaagaag
gaggaagaagagaatgctaaggctgctccggagaagaatcagtctcagtctcagtctcaa
caggtgaataatcagcagaagaggaggaataggtgggatcaatctcaggatgaaggtggt
gctaatgctaagaaggctaaaacatctgattgggatgctccggaatcgatgacaccgggg
agatgggatgctacaccaactccggggagagttattgatgctactccagggaggaggaat
aggtgggatgagactccgacgccggggaggttggttgattctgatgctactcctggtggt
gttactcctggtgctacacctggtgcaactgcttgggatgctactcctaagcttcctgga
atggctactccaactcctaagagacaaagatcaagatgggatgaaacacctgctactatg
gggagtgcaactccattacctggtgcaactcctgctgctggttatacacctggtgttact
cctgttggtggtgttgaattggctactcctactcctggtgctttacaaggttcatttaca
cctgagcagtataatttgttgaggtgggagagggatattgaagagaggaatcgtcctttg
accgatgaagagcttgatgctatgtttccacaagaagggtataaggttttggatcctcct
gcttcttatgtgccaattagaactcctgcaaggaagcttcttgctacccctacgccgttg
gggactccgctttatcaaattcctgaagagaatcgtggtcagcagtatgatgttcctaag
gaagctcctggtggtttgcctttcatgaaacctgaagattatcagtatttcggggctttg
ttgaatgaagaaaatgaagaggagttgtctccagatgagcagaaagagaggaagattatg
aagcttctgcttaaagtgaagaacggtactccaccgcagaggaaaacagctttgaggcag
ttaactgataaagctcgtgagttcggtgctggacctttgtttaaccgaattctgccattg
cttatgcagcctactttggaggaccaagagagacatcttttggttaaggtaattgataga
gttctttataaattggatgaattggttcggccttatgtgcataagattcttgttgttatt
gagcccctcttgattgatgaagactactatgcccgtgttgaggggagagaaataatatcg
aatctcagtaaagcggctggtttggccaccatgattgctgccatgaggcctgacatagat
aacattgatgaatatgttaggaataccactgctagagcttttagtgttgttgcgtctgct
cttggtattccggctttattgcccttcctgaaggctgtttgtcagagtaagaaatcatgg
caagctcgacacactggtattaagattgtacagcagattgccattttaattggatgtgct
gtgttgccccatctgagatctcttgtggagattatagagcatggtttgaatgatgagaat
cagaaggtgaggacgatcactgcattatctctggctgcacttgctgaggcggctgcccct
tatggtattgaaagttttgactcggtgttgaaaccactgtggaagggaattaggcaacac
cgtggtaaggtgctggctgcgtttttgaaggcaattgggtttatcattccgttgatggaa
gccttatatgctagctattatacaaaggaagtcatgcttattctgattcgggagtttcag
tcacccgatgaagaaatgaagaaaattgttttgaaagtggtgaagcagtgtgtgagcacc
gagggtgtggaagctgagtatattagaactgatatcctccctgagtttttcagaaacttc
tgggttaggaggatggctttggatagaagaaactacaagcaacttgtggagacgactgtt
gagatagcaaataaggtcggtgttgccgatattgttggaagaattgttgaagatcttaaa
gatgagagtgaaccttataggcgaatggtcatggaaactattgagaaggtggtcactaac
ttgggatcatctgatatagatgcacggttggaagaacttttgattgatggtattctttat
gctttccaagagcagaccagcgatgatgctaatgtgatgcttaatgggttcggtgcagtt
gtaaactcgctcgggcagagagtaaaaccatatcttcctcagatttgtggtaccatcaag
tggaggttaaacaataagagtgcaaaggtgagacagcaagcagcagacctcatttcgagg
attgctgttgtcatgaagcagtgccatgaggaacagttgatgggtcatcttggtgttgtc
ttgtatgagtatcttggagaagagtatccagaagttctaggttcaattttgggtgctctc
aagtctattgttaatgttattggtatgacgaagatgactccacctattaaggatttgctt
cccaggttgactccaatattgaagaataggcacgagaaagtccaggagaactgtattgac
cttgtgggtaggattgctgatcgtggggctgagtttgtacctgccagagaatggatgagg
atctgttttgagcttcttgagatgcttaaggcacacaagaagggaattcgtagagctact
gtgaacactttcggatatattgcaaaagccatcggaccacaggatgtcctggcaactcta
ttgaataatctcaaggtgcaggagaggcagaatcgtgtatgcactactgttgccattgct
attgttgcagaaacatgttcacccttcacagttttgccagcactgatgaatgagtaccgt
gttccagagctaaatgtgcaaaatggtgtgctcaagtctctctctttcctctttgagtat
attggtgaaatgggcaaggactacatctatgcagtaactcctttgcttgaggatgctctt
atggacagggatttggttcataggcagacagctgcatctgctgtgaagcacatggcattg
ggagtggctggtttgggttgcgaggatgcgctggtccatttgctgaactatgtttggcca
aatatatttgaaacttctccacatgtgataaatgctgtgatggaagccattgaagggatg
cgggtagccttgggttctgctgttgttcttaattactgtcttcaagggctgttccaccct
gcccgaaaagtgagggaggtgtattggaagatttataactctctttatattggagctcaa
gacgctcttgttgcagcatacccttctctagaggatgagcacaacaatgtttacagtaga
tcggagttgatgatgtttatttag

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