Trifolium pratense (red clover): 123911238
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Entry
123911238 CDS
T08949
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123911238
09122 Translation
03013 Nucleocytoplasmic transport
123911238
03015 mRNA surveillance pathway
123911238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123911238
03041 Spliceosome [BR:
tpra03041
]
123911238
03009 Ribosome biogenesis [BR:
tpra03009
]
123911238
03012 Translation factors [BR:
tpra03012
]
123911238
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123911238
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123911238
mRNA cycle factors
Stress granule specific factors
123911238
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123911238
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
Helicases
123911238
Translation factors [BR:
tpra03012
]
Eukaryotic type
Initiation factors
eIF-4
123911238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
Cas3-like_C_2
NAT10_TcmA_helicase
AAA_30
CMS1
Motif
Other DBs
NCBI-GeneID:
123911238
NCBI-ProteinID:
XP_045818573
LinkDB
All DBs
Position
LG1:685264..689219
Genome browser
AA seq
394 aa
AA seq
DB search
MAGMRTRGCFFETTEGVKTITTFEEMGFKDNLLRGIYQFGFDKPSPIQQRAVLPIIQGRD
VIAQAQSGTGKTSMIALTVCQLVDTSVREVQALIVSPTRELASQTERIISAIGDFANVQA
HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTKAIKLLVLDESDEMLSRGF
KDKIYDVYRYLRPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELALESIKQYFVA
VEREEWKFDTLCDLYDHVTITQAVVFCNTKQKVDWLAEKMRNNNFTVSSMHGDMPQRERD
AIMGEFCAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGIA
INFVKSDDINSLRDIEQYYGTQIVDLPMNVADLI
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaatgagaacaagaggatgcttcttcgagacaacagagggcgtaaagacgatt
acaaccttcgaggagatgggattcaaagacaatttactccgtggaatctaccaattcggt
ttcgataaaccatcgccgattcaacagcgcgccgttctgcctatcattcagggtcgtgac
gtcatcgctcaggctcaatctggtaccggcaaaacctccatgattgctctaactgtttgc
cagcttgtcgatacctccgtcagagaggtgcaggccttaattgtgtctccgacgagggaa
ctggcttcacaaactgaaagaattatatcggctattggggattttgcaaacgtacaagcg
catgcttgtgttggaggtaaaagtgtgggagaagatataaggaaacttgaacacggagtt
catgtggtgtctggaactcctggtcgagtatgtgacatgatcaagaggagaacattgcgc
acaaaagctatcaagttgctagttctggatgaatctgatgaaatgctgagcagaggattt
aaagataaaatttatgatgtgtatagatatctccgacccgatcttcaggtttgcttgatc
tctgctacgctgcctcatgaaattttggagatgacaaataagtttatgacagatcctgtc
aggatccttgtaaaacgtgatgaattggcgttggagagcatcaagcaatattttgttgcg
gttgaaagggaggaatggaagtttgatactctttgtgatctttatgatcatgttaccatc
actcaagctgttgtattctgtaacaccaagcaaaaggtggactggttagctgaaaaaatg
cgtaacaataatttcaccgtctcatcaatgcacggtgacatgcctcaaagagaaagagat
gcgattatgggagaattttgtgctggaacaacccgagtattgataacaaccgatgtttgg
gctcgtggccttgatgtacagcaggtttcgctagttattaattatgatcttcccaataat
agagagttgtacattcatcggataggccgttctggacgttttgggcgcaagggtattgca
ataaattttgtgaaaagcgatgatatcaacagcttgagggacattgagcagtattatggt
actcagattgttgatctgccaatgaatgttgctgatcttatatag
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