Trifolium pratense (red clover): 123911294
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Entry
123911294 CDS
T08949
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123911294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123911294
03009 Ribosome biogenesis [BR:
tpra03009
]
123911294
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123911294
Spliceosome [BR:
tpra03041
]
Complex A
U2 snRNP components
U2 related factors
123911294
Complex B
123911294
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123911294
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
Helicases
123911294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
ABC_tran
T2SSE
AAA_7
Flavi_DEAD
AAA_30
FtsK_SpoIIIE
AAA_33
AAA_29
Motif
Other DBs
NCBI-GeneID:
123911294
NCBI-ProteinID:
XP_045818648
LinkDB
All DBs
Position
LG2:73568338..73572674
Genome browser
AA seq
718 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAASKMVKTNGNSLVNHWNGKPYSQRYFDILDKRKTLPVWHQK
DDFLQVLKDNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRKKMMVACTQPRRVAAMS
VSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILD
EAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVE
IFYTQEPERDYMEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRRISKEVANLGDQVG
PVKAVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG
FAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYP
EILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGE
IMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPREAAKAADEAKARFAHI
DGDHLTLLNVYHAYKQNNEDASWCYDNFINNRALKSADNVRQQLVRIMARFNLKLCSTDF
NSRDYYINIRKSMLAGYFMQVAHLERTGHYLTVKDNQVVNLHPSNCLDHKPEWVIYNEYV
LTSRNYIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKDEARIRK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagaaaggaaaagaaaagtgagtttattcgacgtcgttgacgactctgctgct
tctaagatggtgaaaaccaacggcaacagtctcgttaatcactggaatggtaaaccttac
tctcaaaggtacttcgatattctagataagaggaaaacccttcccgtttggcaccagaaa
gatgattttttgcaagttttgaaggataatcaaactttgattcttgttggtgaaactggt
agtggtaaaaccactcagattcctcaatttgttttggaagctgttgatttagagaccccg
gataaacgcaagaagatgatggttgcatgcactcagcctcgtagagtagctgcaatgtct
gtttcacgccgtgtcgctgaagagatggatgtcactattggggaagaagttggttatagc
atccgttttgaggattgtagtagtgcaaggacagttttgaagtatctaactgatggtatg
cttttgagagaagcaatgacggatccacttttggagcgatacaaagtaattattcttgat
gaggcacacgaaaggactttggctactgatgtgctatttggtcttcttaaggaagttctt
aaaaacagacctgacttgaagttggtggttatgagtgcaacgcttgaagctgaaaagttt
caaggatatttttttggtgccccacttatgaaagttcctggaaggttacatccagtggaa
attttttatactcaggaaccagaaagggattacatggaggctgctattaggacagtggtg
cagattcacatgtgtgaacctgctggagacatacttgtttttcttactggagaggaggag
atagaagatgcatgccgcagaatatcgaaagaagttgcaaatttgggtgaccaggtgggc
cctgtgaaagcagtaccattgtattctactcttcccccagcaatgcagcagaagattttt
gagccagctccacctccagttaaggagggaggcccccctggaaggaagattgtggtatca
acaaacatagcagaaacttcgttgacaattgatggtattgtctatgttattgaccctgga
tttgctaagcagaaggtttataaccctcgagttcgtgttgagtctttgttggtgtctccg
atatcaaaggctagtgcacatcagagatctgggcgtgctggaagaactcaaccggggaaa
tgctttagactttataccgaaagaagtttcaataatgatcttcagcctcagacctatcct
gaaattttgagatctaatcttgccaacacagttcttacattgaagaaactgggtatagat
gatttagtgcattttgacttcatggaccctcctgcccctgaaaccttaatgcgtgctttg
gaagtgttgaattacttgggtgcactggatgatgaaggtaacttaacaaagctgggtgaa
attatgagcgagtttccgttggaccctcagatgtcaaagatgcttgttgttagtcccgaa
ttcaactgttcaaatgagattctttcaatttctgccatgctatcagtacccaattgcttt
atccggcctagggaggcagcaaaagctgcggatgaagcgaaggctaggtttgcacacatt
gatggagatcatctcacgctcttgaatgtataccacgcctacaagcaaaacaatgaggat
gcttcttggtgctacgacaacttcattaataacagggcactcaaatcagctgataatgtt
cgacaacagcttgttcgtatcatggctcggtttaacttgaagttatgcagcacagacttc
aatagtcgcgactactacatcaacataagaaagtcaatgctagcaggatatttcatgcag
gtggctcatcttgagcggacaggacactacttgacagtgaaagacaaccaggtggtaaac
ttgcatccatcaaattgcctggatcacaagcccgagtgggttatctataatgaatatgtt
cttaccagtcggaattatatacgtactgtgacagatatacgcggtgaatggttagttgat
atagcaccacattactatgatctgtctaatttcccacaatgtgaagcaaagcgtgttctt
gaaaagctttacaagaaacgagagaaagaaaaggatgaagcccggattcgtaaatga
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