Trifolium pratense (red clover): 123911650
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Entry
123911650 CDS
T08949
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123911650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123911650
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123911650
Spliceosome [BR:
tpra03041
]
Complex C
Other components
Step II factors
123911650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
Sigma54_activ_2
TsaE
Flavi_DEAD
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
123911650
NCBI-ProteinID:
XP_045819076
LinkDB
All DBs
Position
LG1:complement(42688650..42697845)
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AA seq
1192 aa
AA seq
DB search
MGSEIPQDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGHSSESVEEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKKEKEIQNEKSSNSKTKFKALAISDDRDRAKELRE
EIEIEAREKQKQKEPPIDRYEDDDGYRDRDRRDRHRDRDRDRYDRDDKRDYRRGNDRDRD
RRERDDRRGNNDRDRDRDRYERRRRDEHEEYGNEKEENGDEKGRRERDSRRGSTGEPELY
MVYKGRISRVMDTGCFVQLDEFRGKEGLVHVSQMATRKIVNAKEVVKRDQQVYVKVISVS
GSKLSLSMRDVDQHSGKDLLPLKKSSEEEAFRTNPQDSKDGPVTRTGLSGIRIVEEDDVG
SSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGVMYQEEGAEEELEIEMNEDE
PAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDL
NRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLP
IYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSV
AKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDE
AHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEI
LYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPE
LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYN
PKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLG
MTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLD
PPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRARFFQPEGDHLTLL
AVYESWKNKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKA
ITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVT
VIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagaaattccacaagatggattgaagaaattggagtatctttctcttgtatct
aaggtatgtactgagttagaatctcacaccggcaccggcgacaaggttctcgccgagttc
attaccgacttaggtcactcatctgagtctgttgaagaattcgacgctaaattgaaagag
aacggtgcggaaatgccggattatttcgtcagaactctactcactataatccacgctatt
cttcctccaaaacctaagaaggagaaagagattcagaatgagaagagttctaattcgaag
acgaagttcaaggctttggctatttcagatgacagggatcgtgctaaggagcttcgggaa
gagattgaaattgaagctagagagaaacagaagcaaaaggaaccaccaattgacaggtat
gaagatgatgatggttatagagatagagatagaagagataggcatagagacagagataga
gataggtatgatagagatgataaaagggattatagaagagggaatgatagagacagagat
aggcgtgaaagagatgatagaagggggaataatgatagagatagggatcgggatcgatat
gagaggcgaaggagagatgagcatgaagagtatggaaatgaaaaggaggagaatggtgat
gagaaagggaggagagaaagagattcgaggcgtggtagtactggtgaaccggagttgtat
atggtttataaaggaagaatttccagggtgatggatactgggtgttttgttcagttggat
gagtttagagggaaggagggtttggttcatgtttctcagatggccactaggaagattgtt
aatgctaaagaggttgttaaaagggatcaacaggtttatgtgaaggtgatttcagtttct
ggttcgaagttgagtctttccatgagggatgttgatcagcatagtgggaaggatcttctt
ccgttgaagaagagctcggaggaggaagcttttcggacgaatccacaagattcaaaagat
gggccggtgactagaacagggctttctgggattaggattgtggaggaggatgatgttggt
tcttctcgcaggccgttgaagagaatgagctctcctgagaggtgggaagcgaaacagttg
attgcttcgggggttttgagtgtttcggagtatccaacttatgatgatgaaggagatgga
gtgatgtaccaagaagaaggtgctgaggaagagcttgagattgagatgaatgaggatgaa
ccggccttcttgcaagggcagagcagatactcgatggatatgtctcctgttaagatcttt
aagaatccagaaggttctctgggtcgtgcggctgcactccagtctgcgcttataaaggag
cgcagggaagtaagagaacagcagcagcgtaccatgcttgattcaattccaaaggatctc
aatcgtccttgggaagatcctatgccagagtcaggtgaaaggcatcttgctcaggagttg
aggggggttggtttgtcggcctatgatatgccagaatggaagaaggatgcctatgggaaa
accattacttttgggcaaaggtcaaagctttctattcaggaacagaggcagagtttgcca
atttacaagttaaagaaagaattgatccaggctgtccatgataatcaggtcttggttgtg
attggtgaaactggttcgggtaagactactcaggtcacacaatatcttgctgaagcgggt
tacaccacaagaggtaaaattggatgtactcaaccccgtagggtggctgcaatgtcagtt
gcaaagagagttgcagaagagtttgggtgtagattaggagaggaagttggttatgctatt
cggtttgaggattgcactggacctgacactgtaatcaagtacatgactgatggtatgctt
cttagagaaatattggtagatgagaatctgtcacagtattctgttataatgcttgatgaa
gcccatgagagaacaattcatacagatgttcttttcggactgctgaagcagctggtgaag
cggaggcctgagttgcgattgattgtcacatctgctactcttgatgctgaaaagttttca
ggatatttctttaactgtaacattttcacaattcctgggagaacttttcctgtggagata
ctttatactaaacagccagaaagtgattacttggatgcttctttgatcactgtcctacag
atccacttgacagaacctgaaggagacattcttctcttcttaactggtcaggaggagatt
gattttgcttgccagtctctctatgagagaatgaaaggattaggtaagaatgtcccggag
ctgatcattttacctgtttatagtgctcttcccagtgaaatgcaatctaggatattcgat
cctgctcctcctgggaaaaggaaagtggttgtggctacaaacattgccgaggcttctttg
actattgatgggatattttatgttattgatccggggtttgctaagcaaaatgtttataac
ccgaagcaaggtcttgattccttggtgataactccgatatcacaagcgtctgccaaacaa
agagctggacgtgcagggcgtactggacctggaaagtgttatcgactctatactgagagt
gcatataggaatgagatgtctcctacttctattccagagattcaaaggataaatttgggc
atgactactcttagcatgaaagccatgggcataaatgatcttctgtcatttgattttatg
gatccaccatcaccccaagcacttatttccgccatggagcagctttacagtcttggagca
ttggatgaagagggtcttctaaccaaactggggaggaaaatggccgagtttcctttggat
ccgccactatccaagatgttgcttgccagtgtagaccttggatgcagtgatgagattttg
acgataattgccatgatccagactggcaacattttttacaggcctagggagaaacaagcc
caagcagatcagaaaagggcaaggtttttccagccagagggtgaccatctcacactactt
gctgtttatgaatcctggaaaaataaaaacttttctggaccctggtgttttgagaatttt
gttcaatctcggtccttgagaagagcacaggatgtaaggaaacagcttctcaccatcatg
gataagtacaaattggatgttgtgagtgctggaaaaaacttcaccaagattaggaaggct
atcactgcagggttcttttttcatgcagctagaaaggacccacaggaaggttacagaaca
ctagttgagaatcagcctgtatatattcatccaagctcagctttgttccagaggcagcca
gactgggtcatataccatgagcttgtaatgacaactaaggaatatatgcgtgaggtcaca
gtcatagaccccaagtggcttgttgaattggctccaagattctttaaagtggcagatcct
acaaagatgagcaaacggaagcggcaagagcgtattgaaccactttatgatagataccat
gagccaaattcatggcgtttgagtaaacgccgtgcatga
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