Trifolium pratense (red clover): 123912862
Help
Entry
123912862 CDS
T08949
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123912862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123912862
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123912862
mRNA degradation factors
5'-3' decay
Decapping complex
123912862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
PEP5_VPS11_N
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
MukF_M
Mo25
Motif
Other DBs
NCBI-GeneID:
123912862
NCBI-ProteinID:
XP_045819397
LinkDB
All DBs
Position
LG3:complement(42689924..42698762)
Genome browser
AA seq
1377 aa
AA seq
DB search
MAAPNQSSSPTPFDMHSFFNPPNPNPNPNLSSPFPPSAPSPPPSSSSSYPPPTGPFPPQP
FPIHQNNNYPYDHHQNHFPIHHRSISFPTPPLQPQPIPPPSNSNAGASLMALISPRPPTQ
QQQPQQQPQPVSVNSPLPLATPSAASITAANAAAAALTRLPSSKVPKGRYLIGDHVVYDV
DVRLPGEVQPQLEVAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVLNIHTAVRSL
LRGHTQRVTDLAFFAEDVHLLASVGTDGRVFVWKIAEGPDDEDKPQITANIVIAIQIVGE
EKVEHPQICWHCHKQEILIVGMGRHVLRIDTTKVGNGEAFVAEDPPKCPLNKLIDGVQIV
GTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTKPLAILRPHDGHPVFSATFFTAP
HQPGHIVLITAGPQNREVKVWVSTSEEGWLLPSDTESWKCTQTLELNSSAKPTQKDAFFN
QVAALPHAGLLLLANAQRNAIYAVHLEYGPNPESTRMDYLAEFTVTMPILSFTGTSDILP
HGEHIVQVYCVQTLAIQQYALDLAQCLPPPSENVGLVKSDSSVSRDVITAEGFASLESSA
GRTSEISLPSSAPKTMMQASSTDSGLVARYPLSSGHIEAPISREISSSNIEAKTVTLAPS
SSDADIVCVPSPPLPLSPRLSRKLSDFRSPQSNLSDHVGDQAVNDYSVERQMGTIHRNLS
GQLSSDSKNDEKKIKQDDISTVLNPSVMFKQPTHLVTPSEITKASSSSETNMIDRMSEVE
TKIQDVVDVGNAEVEVKVVGEARPYQNDDFGRQGPQQNPVSDGKEKFFCSQASDLGIEMA
RECGAIGGETYITEQTGHVDSTGGDSLAQPSNAGEDGLQDLPKDVHEKVSESSTSMVVPP
SPAPNAKGKRQKGKNSQPSGPSSPSQSVCNSTDSSYEPNGISNLPSTENGLPQIMAMQDS
INQLLTMQKEMQKQMSMVVAVPVTKEGRRLEAALGKNMEKAVKSNADALWARIQDENAKN
EKLLRDRIQQVTGLITNFMNKDLPSLLEKTVKKEMGSVGQAVIRSMSPAIEKIISSTIVE
TFQRGVGDKAVNQLDKSVNSKLEATVARQIQAQFQTTAKQALQDALKSSFETTVVPAFEM
SCKAMFEQVDTTFQKGMAEHSNAVQQRLESGPTSLAMTLRDSINSASSVTQTLSRELLEG
QRKLMALATSRTNSGTLSTLPIQLNNGPLLHEKVEAPLDPTKELSRLISERKYEEAFIAA
LHRSDVSIVSWLCSQVDLHGLLSMVPLPLSQGVVLSLLQQLACDINNDMSRKILWMTDVS
TAINPSDPMITMHVRPIFEQVYQILNHQRSLPSITGPDLSAIRLLLHVINSMLTTCK
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccaaatcaatcatcatcaccaactcctttcgatatgcactctttcttcaat
cccccaaaccctaaccctaaccctaacctttcttctccattccctccttctgctccttct
ccaccaccctcttcttcctcttcttaccctcctcccaccggtcctttccctcctcaacct
ttcccaatccatcaaaacaataactacccttacgatcaccaccaaaaccatttcccaatt
caccaccgttcaatttcattccctactccacctcttcaacctcaacctattcctccacct
tcaaattccaacgccggtgctagtctcatggctcttatcagcccccgtcctcctacacaa
caacaacaaccacaacaacaaccgcaacctgtctctgttaattctcctttgccgctcgct
actccatccgctgcttccattacagcggctaatgctgctgcggctgctttgactcggttg
ccgagtagtaaggttcctaagggaaggtatttgattggtgaccatgttgtgtatgatgtc
gatgttaggttgcctggtgaagtacagcctcaacttgaagttgctccgattacgaaatat
gggtcggaccctaatccggttttgggtagacagattgctgtgaataagtcttatatatgt
tatggattgaaacaggggaatatcagagtgcttaatattcatactgcagttaggtctttg
cttagaggacacactcagagggtcacagacttggcattctttgctgaagatgttcatttg
ctggctagtgttggcacagatggccgtgtctttgtgtggaaaattgctgaaggtcctgat
gatgaagataagcctcaaattactgctaatattgttattgctattcaaatagtaggagag
gagaaagttgaacatccccaaatatgctggcactgccacaaacaagagattttgatagtt
ggtatgggaagacatgttctgagaattgacaccacaaaagttggaaatggtgaagccttc
gtggcagaagatcctccaaaatgtccccttaacaagctcattgatggggttcagattgta
ggaacacatgatggtgaggtcactgatttgtcaatgtgccaatggatgacaaatcgattg
gtatctgcatcacaggatggcacgataaaaatatgggaggatcggaagacaaaaccactt
gctattttgagaccacatgatgggcatcctgttttttctgctactttttttactgctccc
caccagcctggtcatattgttcttatcacagcgggaccacaaaaccgggaagtgaaggtc
tgggtctcaacaagtgaagaaggttggctgctcccaagtgataccgaatcctggaaatgc
actcagacattggagttgaatagttcagctaagccgactcaaaaggatgcattctttaat
caagttgcagcattgcctcatgcaggtctgctcttacttgcaaatgcccagaggaatgct
atatatgctgtgcacttagaatatggtcctaatccggaatcaactcgcatggattattta
gccgagtttactgtgacaatgcccattcttagttttactggaacaagtgatatattgcct
catggcgaacatattgttcaggtttattgtgttcagacactggctattcagcagtatgct
ttggatttagcacaatgcttgcctccaccatcggaaaatgtgggactagttaagtcagat
tccagtgtttcccgagatgtaattactgctgaaggattcgcctctttagaatcgtccgca
ggtagaacatctgagatatctttacccagttctgctcccaagacaatgatgcaagcaagt
agcactgatagtggtcttgtggcaagataccctttaagctcgggtcatattgaggcacct
atttctagagaaatcagcagttcaaatattgaagctaaaactgttacattggctccttct
agtagtgatgctgatattgtttgtgttccttctccacctctgcctttgagcccaaggttg
tccaggaagctttctgatttcaggagtccacaatctaacttgagtgatcatgttggggac
caagctgttaatgattattcagttgaaagacaaatgggtaccattcacaggaacttgtcc
ggccaattgagtagtgattcaaagaatgatgaaaagaaaatcaaacaggacgacatttct
actgtacttaacccttctgtcatgtttaagcaaccaactcatctggttacaccatctgag
ataacaaaagccagttcctcctctgagactaatatgattgatagaatgagtgaggtagaa
acaaagatccaggatgtggttgatgtgggtaatgccgaagtagaagtgaaagtggtaggt
gaggcaaggccttatcaaaatgatgactttggaaggcaggggccacaacaaaaccctgtt
tctgacggcaaagaaaaattcttttgctctcaggcttctgatcttggcattgagatggcc
cgagaatgtggtgcaataggtggggagacttacattacagagcaaactggacacgttgat
tctactggaggggactcgctggcccagccttctaatgcaggcgaggatggactccaagac
ttgccaaaagatgtacatgaaaaggtttctgagtcatccacatcaatggtagtaccaccg
tcacctgcacctaatgcaaaagggaaaagacaaaagggtaaaaattctcaaccatcaggt
ccatcttccccatctcaaagtgtgtgcaattcaactgattcgtcctatgaaccaaatgga
atttcaaaccttccatctacagaaaatggtttgcctcaaattatggcaatgcaagactca
atcaatcagttattgacaatgcaaaaggagatgcagaaacaaatgtcaatggtggttgca
gttccagttacaaaagagggtagaaggcttgaggctgccctagggaaaaacatggaaaaa
gctgtcaagtccaatgctgatgctctctgggctagaatacaagatgagaatgcaaaaaat
gaaaagttgttgcgagatcgtatccaacaggttacaggtttgattactaacttcatgaac
aaggatctaccgtcactattggagaaaactgtaaagaaggaaatgggttcagttgggcaa
gctgtaattcgttcaatgtctcctgctattgagaaaataatatcctctactatagtggaa
accttccagagaggagtgggcgacaaggcagtgaatcaacttgataagtcagttaattca
aaactcgaagctaccgttgctaggcaaatccaagcacagtttcagacaactgccaaacag
gcacttcaggatgcactcaagtccagttttgaaacaacagtggttcctgcatttgagatg
tcctgcaaagccatgtttgagcaagtggatactacattccagaaaggcatggctgaacat
tcaaatgcagtgcagcaacgccttgaatcgggccctacttcattggcaatgacactaagg
gattccattaattcagcatcatcagttactcaaaccttgagtagagaattgcttgagggc
cagagaaagctaatggcacttgcaacctcaagaacaaactcaggcacattgagtactctg
cccatccagctgaacaacggtcctttacttcatgaaaaggttgaggcaccactagatccc
acaaaggagctctcaaggttaatttctgaaaggaaatatgaggaggcgtttattgccgca
ctgcatagaagtgatgtatctattgtatcgtggttatgttctcaggttgatttacatgga
ctcttgtcaatggttcctcttcccttaagccaaggtgtagtgctttcacttttgcagcag
ttggcgtgtgatatcaacaacgacatgtcccgaaagatcttgtggatgacagatgtgtct
acagccataaatccctcagatcccatgataacaatgcacgtccgacccatctttgagcaa
gtctatcagatactgaatcatcaacgtagcttgccttcaatcactggacccgatctttca
gctatccgtcttttattgcatgtcatcaactctatgcttacgacatgtaaatga
DBGET
integrated database retrieval system
