Trifolium pratense (red clover): 123912903
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Entry
123912903 CDS
T08949
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123912903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123912903
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
123912903
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123912903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
123912903
NCBI-ProteinID:
XP_045819449
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All DBs
Position
LG3:43088728..43093924
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AA seq
721 aa
AA seq
DB search
MKPRKLHSSILSRALSRALSSSTATTTSPQCGSAFPLKTVTVANFEPSLTELRHHVRSSD
FVAIDLEMTGVTSSPWRDSFEFDRSDVRYLKVRDSASRFAVVQFGVCPFRWDHSIQSFVA
YPYNFFVFPRQELAGFGPCNEFLCQTTSMDFLARYQFDFNACIHEGISYLSREQEREAIR
SLNSTHDSEWSDISKLNDVRDAPSVNMADILFTARMKDKFSEWRDGLLQEQNQSGQIQGT
RKDSKQQFQEMFFKTHPALKLDGFTSRQLKLIQLVVKKHFKDLSYFNVNNEVSGSQQIVV
YTDSEDELNLLLKEVKEENHRAKEAKIQSAVGFRHVIDLLSSEQKLIVGHNCFLDIAHVY
SKFIGPLPGTPEEFVASVNKCFPHIADTKILMNTNFMLQERMKKSKKSLAAAFTMFCPQI
AGGSKSTELVSPSHVKVNVEVDDSRSSSWNPGGKHEAGYDAFMTGCIFAQLCNDLGVDFK
LHESSKQLAFNEKLRKYINHLYLSWMHGDIIDLNTGDKVANSTPSYNLKRRYPKIMFENI
VIIWGFPSNIKAGEVRECISKAFGLTAIVSVYHLDATAVFVQFSKTELVSDFLLLKESLE
RSNGPISVLHPLAKLLEGGNTCAANYDTYKEICGSPLSETLFADQANKVSMKWKTKLIEN
KISLSSEEHESSCLHDNANDVALNLVEKIKPNKIDQLRNDQSRGQASPSEIEESCVAEAN
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaagccacgaaaacttcattcttcgattctctcacgtgcgctatcacgtgccttaagc
tcttcaaccgcaacaaccacgtccccgcaatgcggatcggcgtttccattgaagacagta
accgttgcaaactttgaaccgtcgttaacggaactccggcaccatgtccggtcatcggac
tttgttgcgattgacctcgagatgaccggagttaccagttctccctggcgtgattcattt
gagtttgatcgctctgacgttcggtatcttaaggttagagactccgcgagcaggttcgcc
gttgttcaatttggcgtttgtcccttccgatgggatcattccatccagtcctttgtcgct
tatccgtacaatttctttgtttttccacgtcaggagcttgcaggttttggcccatgtaat
gaatttctctgccagactacttcaatggatttcttggccagataccagtttgattttaat
gcatgcatacatgaaggaatatcttatttgtccagagaacaagaaagagaagcaataagg
agtttgaattcaacacatgatagtgagtggtcagacatttctaaattaaatgatgttagg
gatgcgccatctgtcaacatggcagacattttattcactgcacgaatgaaagataagttc
agtgaatggcgtgatgggttattacaggagcaaaatcagtcaggccaaattcaaggaact
cgaaaagactcaaaacaacaatttcaagagatgttctttaagacgcatccagctctcaag
cttgatggattcacctcacgtcaacttaagttgattcagttggttgtaaaaaaacacttc
aaagatctttcatatttcaatgtgaacaatgaggtttctggttcacaacaaatagttgtg
tatacggactcggaggatgagctaaacttacttctgaaggaggtaaaagaggaaaatcac
agggcaaaagaggcgaagatccaatctgcagtcggatttcgccatgttattgatcttctt
tcgtcagaacagaagttgatagttggtcataattgttttctagatattgctcatgtctac
agcaaatttatcggtcctcttcctgggacacctgaagagtttgttgcttctgttaacaag
tgctttccacacattgcggacacaaaaatactcatgaacactaattttatgctccaagaa
agaatgaaaaagtcaaaaaagtctctggctgcagcatttactatgttttgtccacaaatt
gctggaggctccaaaagcactgagctagtttcaccatcccatgtgaaagtaaatgttgaa
gttgatgattcaagatcgtctagctggaaccctggtggcaagcatgaggctggatatgat
gctttcatgactggatgcatttttgcccaattatgcaatgatttaggagtcgattttaaa
ctccacgaatcttcaaaacaattagctttcaatgagaaactacggaaatacattaatcat
ctatatcttagttggatgcacggcgatattattgatctaaatacaggtgataaagttgca
aattctacaccaagctataacctcaagagacggtacccaaagattatgttcgagaacatt
gttattatttggggatttccttctaatattaaggctggcgaagtacgcgagtgtatatct
aaagcttttggtctaactgctatagtttctgtctaccacttggatgcaacagcagttttc
gttcagtttagcaaaactgaactagtttccgactttcttttattgaaggaaagcttagag
agaagtaatggtccaatctcggttttgcatccgctggcaaaacttttggaaggtggaaat
acatgtgctgctaattatgatacttataaagaaatttgtggttcacccttatctgaaact
ctattcgctgatcaagcaaacaaagtttctatgaagtggaaaaccaaattgattgaaaac
aagatatcattaagtagcgaagaacatgaaagttcatgtttacatgataatgcaaatgat
gtagctttgaatcttgtagaaaagatcaagccaaacaaaattgatcagttaagaaatgat
caatcccgtgggcaagcctccccatctgagattgaagaatcctgtgttgccgaagccaat
ttgtga
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