Trifolium pratense (red clover): 123913520
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Entry
123913520 CDS
T08949
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123913520
03036 Chromosome and associated proteins [BR:
tpra03036
]
123913520
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123913520
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
123913520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
SH2_2
zf-CCHC_3
HHH_7
YqgF
SPT6_acidic
HHH_9
HTH_44
Spt6_S1
Tex_central_region
DUF7188
S1
Motif
Other DBs
NCBI-GeneID:
123913520
NCBI-ProteinID:
XP_045820247
LinkDB
All DBs
Position
LG3:52828353..52840467
Genome browser
AA seq
2203 aa
AA seq
DB search
MARVRKKSLLEDEEQEKIRRKGKRKLASTADDDAEEDLDEFEIDGFLVDNVEDEEDGGEE
DNPMQTQKKNKRRRSARNIVLDDEDLELIRENKSLNQGKMSAGKLKRLKKTGVDTEPMEH
SSDDEGSLFDGLSEDESNDAEYDMSDDMSDFIEDEEPVVYGKGDSLIRKKKFKDIKHSSS
LSKEAKRRSGKSGLPDQPKNKYGAGEGISVADADLPERIKIIEDIVGSIPVDRMSIEEES
SWILRQLVSNINPMFSEAKSCKLFDSVNREDIVRFLELHHIKKYDIPFIAMYRKEHCPSL
LGDGKQDESENTLLNDGEGKPKLNWHKILWIIKELDIKWLHLQKRKSMLQKYYNKHFEDE
CQMSFLAEESSFHKQIFDSITNMLEKAETEREIDDIDMKFNLYFPPADEFLSSGYKRPLM
KTYYSDCRKAGLSSLARKIGNPEKFGSLVTLNQVGIVSEEDPEESPEVMASIYTCETFPT
SEAVLKGARHMASLMLSCEIPFRKYVRGIFMDKALVSTRPTLKGNIVIDSFHEFAGFKWL
KDKPLLKFEDSQWLLIQKAEEEELLKVDIKLPDDAVKELMKVCNDAYLKDSEGTSTQLWN
EQRKLILQDTISNFLLPSMEKEARALLNAKAKNCSLMKYGMQFWNRVSVAPYQNNENTAA
QERGVVACCWGNGKPGTTFVMLDSKGELVDLMHAGSLTLRSQNINDQQRRKSDQKCVLKF
LTIHRPNVIVLGAANASCIRLKEDINEIISIMAEDNFQDADQDMNGLPAVVLGDEGLPRL
YEESEISTSQFPRQYGIVKRAVALGRYLLNPLAMVATLCGVNKEILSWKLNPLERFLSSD
EKMEMIEWIMIDITNQVGIDINLGTRHDWLLAPLLFVSGLGPIKAGILHRELLGGSDVRN
RKDLAKFGLNTKRVFCNAVGFLQVSCDDPNFVDTAGNILDRTRIHPESYSLAEELARAVV
TKHYADANDTQLNAIECIQNDPKLLDNFDLNEYADRLETEKDEYKRVTLFDIKMELLHGF
KDPRSPYQEPTQDDEYYMVTGEPGVALIEGERVQATVRRVLARQAFCELESGISGIVFRE
DFSDDIGDIPLTEKLREGVVLKCKVKLIDKSRCQVTLTCKVSDLKSVGDQSFREMDPYYS
QGNIILPSQQESADKKDIANKSFLSRKISHPHFQNITADQAKEFLADKAVGEYIFHPSSK
GLCYLTLSLKFFDTIYVHKDILEGEKSHDMNSLAELGRTLKIGEEIFENIDKVIELYVNP
LVVQLKNLINFRKFKKGTKAEVDELLKHEKEEYPNRIPYGIGISYDHPGLFILSYIRSTN
PHHEFIAIHPKGFRFRKQIFNNIEQLMAYFQRHINDKVTRGNDYNESGDGRGSGRGRGRG
RGGGACYKCGESGHMSRECTQEGGGGGGRGGGSCYKCGESGHMARECTQEGGGGGGRGGG
GGNCYKCGESGHMARECTQEGGGGGGGGGGNCYKCGESGHMARECTQEGGGGGGWGGGSG
GGGGGNCYKCGESGHMARECTQEGGGGGGRGGGGACYKCGESGHMARECTQEGGGGGGRG
GGGACYKCGESGHMARECTQEGGGGGGRGGGACYKCGESGHMARDCTQESGGGGGWSSSG
GRGRGRGRGRGSSHSSFSQDDSMDVNDGGGSGWGGTGGKSWGGNSTNEESNTEKIGWGVA
TGGKTWGGNSTNEESNTEKGGWGVATASNSGSGNENAGWGAAPGKKETPSGGSGWGTTGG
TSWGGNSTNKESNTTSNGGSENENAGWSAAPGKNETPSGGGSGWGATGGKSWGGSGANEE
SNTAKGGWGVPTSSNGGSGNENAGWSAASAKNDTPSGGESGWGATGGKSWGGNSTNKESN
TTGGWGATTASNGGSGNENAGWSAASAKNDTPSGGESGWGATGGKSWCGNSTNKESNTTG
GWGATTASNGESGNEKSGWSAAHGKNATPSGGESGWGGTGGGGGWGGSGGKNWGGSSTYE
DSNVAEGGGSGYGGGGGRGGGRGGGACYKCGESGHMARDCTQEGGGGRGGGGRGGGRGGG
ACYKCGESGHMARECTQEGGGGRGGGRGGGACYKCGESGHMARECTQEGGGGGGRGGGGG
NCYKCGESGHMARECTQEGGGGGGRGGGGACYKCGESGHMARDCSQGGGGGRGGGGGRGG
GNCYKCGEAGHMARDCTQESGGGGGGGWSSSGGGGGGGWTSTG
NT seq
6612 nt
NT seq
+upstream
nt +downstream
nt
atggcacgagtacgaaaaaaatctcttctcgaagatgaagaacaagagaaaatccgaagg
aaagggaaaaggaaattagcttctactgccgacgatgatgcagaggaagacttggatgag
tttgagattgatgggtttttagttgataatgtcgaagatgaagaagatggtggggaagaa
gataatcctatgcaaacgcaaaagaagaacaagagaaggagatcagcaagaaacattgtt
cttgatgacgaagacctcgagttaatccgtgagaacaagagcttaaatcaaggaaaaatg
agtgctggaaaactcaagaggctcaaaaagactggtgtagatactgagccgatggaacac
tcttctgatgatgaaggatctctttttgatgggctttctgaagatgagtctaatgatgca
gaatatgatatgtcagatgatatgtcagattttatagaggatgaagagcctgttgtctat
gggaaaggagattctctcatcaggaaaaaaaagtttaaagacattaaacattcgtcttcg
ctttcaaaagaagccaagcgtagatctggcaagtcaggtcttccggatcagcctaaaaat
aagtacggagctggagagggtatatctgtagctgatgcagacttacctgagaggattaag
ataattgaggacattgtaggatctattccagttgacagaatgagtattgaagaagaaagt
tcttggatactccgtcaacttgtgtccaacataaatccaatgttcagcgaggccaaatcc
tgcaaactatttgattcagtaaatagggaagatattgttaggttcttggaattgcatcat
ataaagaaatatgatattccgtttattgcaatgtaccgtaaggaacactgccccagtctt
ctgggagatggtaaacaggatgagtcagaaaatacattattgaatgatggtgagggaaag
cctaaactgaactggcacaagatactctggataatcaaggaattggatataaaatggcta
catcttcagaagcggaagagcatgctccaaaagtactataacaaacactttgaggacgaa
tgccaaatgtctttccttgccgaggaatccagttttcataagcagatttttgactcgatc
accaatatgcttgagaaggctgaaacagagagagagattgatgatattgatatgaagttt
aatttatactttccaccagccgacgagttcttaagtagtggctataaaaggcctctgatg
aagacatactattccgattgcagaaaggcaggattgtcatcacttgctaggaaaattgga
aatcctgagaaatttggttctctagttactcttaaccaagtgggaattgtcagtgaagaa
gatccagaggaatctccggaggtgatggcttcaatatatacatgtgaaacttttccaaca
tcagaagctgtacttaaaggcgccagacacatggcttccttgatgttaagctgtgagata
cctttcaggaaatatgtccgcggcatatttatggataaggctttagtatcaactcgccct
acattgaaaggaaatatagtaatagattcctttcatgaatttgctggatttaagtggctg
aaggataaacctctcttgaagtttgaggattctcagtggcttctcattcagaaggctgaa
gaagaggagcttcttaaagtagacataaagttgcctgatgatgctgtaaaggagttgatg
aaggtctgcaatgatgcttatctaaaagacagtgaaggaacatctactcaactttggaat
gagcagcgtaaattaatcctgcaggatactatttcaaactttcttttgccttctatggag
aaggaagcacgtgcattgttaaatgccaaggcaaaaaactgctcattaatgaaatatggg
atgcagttttggaatagagtctctgttgcaccatatcaaaacaacgaaaatactgctgca
caagagcgcggagtagtagcttgttgttggggaaatggtaagccaggtaccacatttgtc
atgttggattcaaaaggcgagttggttgatctgatgcatgccgggtcactgacattgcga
tctcagaatatcaatgaccagcagcgcagaaaaagtgatcagaagtgtgttctcaagttc
cttacaattcatcgaccaaatgttattgtattaggagctgccaatgcgtcctgtataagg
ttgaaggaggacattaatgagattatttccattatggcggaggacaattttcaagacgcc
gatcaagatatgaatggactaccagcagttgtattgggggatgaaggcttgcctcgtctg
tatgaagagtcagaaatttcaacgagccagtttcctagacaatatggcattgtcaagaga
gctgtggcccttggccgttaccttctaaatccgctggcaatggttgcaacactgtgtgga
gtcaataaagagatattgtcttggaaattgaaccctctggagagattcttatcaagtgac
gagaagatggagatgattgaatggatcatgatagatattacaaaccaagtaggtatagac
ataaatttgggaactagacatgactggctgttggcacctttgctgttcgtttctggtctt
ggacccataaaagctggtattttgcacagagaactacttggaggttcagatgtgagaaac
cgaaaggacttggctaaatttggactgaacacaaaaagggttttctgcaatgctgttggt
tttttacaggtttcttgtgatgacccaaattttgttgatactgctggaaatatccttgac
cgtacaagaattcatccagagtcatatagtcttgctgaggaattagctagagctgttgtt
accaaacattatgctgatgccaatgatacccaattgaatgcaattgaatgtattcaaaat
gatccaaaactgctagacaattttgatctaaatgaatatgcagatagactggaaacagaa
aaagatgaatacaaaagggttactctttttgacataaagatggaactactccatggattt
aaagatcccaggagcccttatcaggaaccgactcaagatgacgagtactatatggtaact
ggagaaccgggggttgccctgattgagggagaaagagttcaggcaacagttcgtcgggta
ctggctcgccaagcattctgtgagcttgaatctggaatatctggaatagtgttcagggag
gatttttcagatgatattggggatataccgttaacggaaaaattgcgtgaaggtgttgtg
cttaaatgcaaggtcaaactaattgataagagtagatgccaggttactctgacatgtaaa
gttagtgatttgaagagtgttggagatcaaagtttccgtgaaatggatccctattattct
caaggaaacatcatcttgccaagtcaacaagagtcagcagacaaaaaggatattgcaaat
aaaagtttcttgtcaagaaaaatttctcatccccattttcagaatataactgcagatcaa
gcaaaagagttccttgcagataaggctgttggggaatatattttccacccaagttcaaag
ggcctatgttatttgaccttatctcttaaattttttgatacaatttatgtacacaaagac
attttggagggtgagaagagtcatgatatgaatagcttggctgaacttggaaggacatta
aaaataggagaggaaatatttgaaaacatagacaaggttattgaactatatgtcaaccca
ttggtagttcaactgaaaaatttgattaatttccgaaaatttaagaagggcacaaaagct
gaagttgacgaactgttaaaacacgagaaggaggaatatccaaataggataccatatggc
attggcatttcatatgatcatcctggccttttcatattgtcgtacattagaagtaccaat
ccacatcatgaatttattgccatccatccaaaaggattcaggttcaggaagcaaatattc
aacaacattgagcagctgatggcatattttcaaaggcatatcaatgataaagttacacgt
ggaaatgattacaatgaaagcggggatggtcgtggatctggtcgcggccgtggccgtggt
cgcggtggtggggcgtgttacaaatgtggtgagtcaggtcacatgtctagggagtgcacc
caggagggtggtggaggtggaggaaggggcggtggatcatgctacaaatgtggcgagtct
ggtcacatggcaagggaatgcacccaagagggtggtggaggtggagggaggggcggcggt
ggcggaaattgttacaaatgtggtgagtcgggtcacatggctagggagtgcacccaagag
ggtggtggaggcggcggcggtggtggtggaaattgttacaaatgtggtgagtcaggtcac
atggctagggagtgcacccaggagggtggtggaggtggagggtggggcggcggcagtggt
ggtggcggcggtggtaattgttacaaatgtggtgagtcgggtcacatggctagagagtgc
acccaagagggtggtggaggtggaggtagggggggtggtggggcatgttacaaatgtggc
gagtctggtcacatggctagagagtgcacccaagagggcggtggaggtggaggtaggggg
ggtggtggagcatgctacaaatgtggcgagtctggtcacatggctagagagtgcacccag
gagggtggtggaggtggagggaggggcggtggtgcttgctataaatgtggtgagtctggt
cacatggctagggactgcacccaggagagtggtggaggtggagggtggagcagcagtggt
ggacgtggtagaggtcgtgggcgtggacgcggatctagtcatagttctttctctcaagat
gatagtatggatgtcaatgatggtggtgggagtggatggggaggaactggtggtaaaagt
tggggtggaaatagcacaaatgaagaaagcaataccgaaaaaattggttggggagtcgca
actggtggtaaaacttggggtggaaatagtacaaatgaagaaagcaatacagaaaaaggt
ggttggggagtcgcaactgccagtaatagtgggtctggaaatgaaaatgctggctggggt
gctgctcctggcaagaaagaaactccctctggtggtagtggatggggaacaaccggtggt
acaagttggggtggaaacagtacaaacaaagaaagcaatacaacaagcaatggtggatct
gaaaatgaaaatgctggatggagtgcggctcctgggaaaaatgaaactccctctggtggt
ggtagtggatggggagcgactggtggtaaaagttggggtggaagcggtgcaaacgaagaa
agcaatacagctaaaggtggttggggagtcccaacatccagcaatggtggatctggaaat
gaaaatgctggatggagtgctgcttctgcgaagaatgatactccctctggtggtgagagt
ggatggggagcgactggtggtaaaagttggggtggaaatagtacaaacaaagaaagcaat
acaacaggtggttggggagccacaactgccagcaatggtggatctggaaatgaaaatgct
ggatggagtgctgcttctgcgaagaatgatactccctctggtggtgagagtggatgggga
gcgactggtggtaaaagttggtgtggaaatagtacaaacaaagaaagcaatacaacaggt
ggttggggagccacaactgccagcaatggtgaatctggaaatgaaaaatctggatggagt
gctgctcacgggaagaatgcaactccctctggtggtgagagtggatggggtgggactggt
ggtgggggtggatggggagggagtggtggtaaaaattggggtggaagtagtacatatgaa
gacagtaatgtagcagaaggtggaggcagtggctatgggggcggtggtggacgaggaggt
ggtagaggtggaggggcatgctacaagtgtggtgagtcagggcatatggctagagactgc
acccaggagggtggtggagggaggggtggcggtggacgaggaggcggaagaggtggtggg
gcgtgctacaagtgtggtgagtcgggtcacatggctagggaatgcacccaagagggtggt
ggaggacgtggaggcggaagaggtggtggcgcgtgctacaagtgtggtgagtcaggtcac
atggctagggaatgcacccaagagggtggtggaggtggagggaggggaggcggcggtgga
aattgttacaaatgtggtgagtcgggtcacatggctagggagtgcacccaagagggtggt
ggtggtggaggaaggggcggtggcggtgcttgctacaagtgtggtgagtcgggtcacatg
gctagggactgtagccagggcggtggtggagggaggggtggtggaggtggaagaggtggt
ggaaattgttacaaatgtggtgaggctggtcacatggctagggactgcacccaggagagt
ggtggaggtggaggtggagggtggagcagcagtggtggaggtggaggcggagggtggacc
agcactggttga
DBGET
integrated database retrieval system
