Trifolium pratense (red clover): 123913590
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Entry
123913590 CDS
T08949
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03022
Basal transcription factors
tpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123913590
09124 Replication and repair
03420 Nucleotide excision repair
123913590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123913590
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123913590
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
123913590
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123913590
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123913590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
123913590
NCBI-ProteinID:
XP_045820335
LinkDB
All DBs
Position
LG3:complement(6153762..6161614)
Genome browser
AA seq
811 aa
AA seq
DB search
MGHGEKGGRPFKKFKGAAKFEDSRKTFAEDDDPYGGDHDAYEDDEGKIKDFSQLELKPDH
VNRPLWACDNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL
ETETIIAVLNKLSKTKLPKEMIKFIHESTANYGKVKLVLKKNRYFVESPFPEVLKTLLRD
DGISRARITSEGAHGDGFTISKALGEIEGTHDELLNQAEVAAAAEEKEAHAFEIDPAQVE
NVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSG
IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHICRFTSDS
KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI
SITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT
KEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAM
KLRKPMIYGATSHVERTKILQAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSR
RQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQVYIYFMPSHILLNYWIMSS
LQNNTYLNYHTRNLWCNVSCCFHLQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLH
YHHLDDQLALLGKVLNAGDDAVGLEQLEEDADEIALKSARRSQGSMSAMSGAKGMVYMEY
STGRNKGQQIKSKPKDPAKRHFLFKKRFGPT
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggtgaaaaaggaggaagaccgttcaagaagttcaaaggcgccgctaaattc
gaagattcacgaaaaacattcgccgaagatgatgatccatatggcggcgatcatgatgca
tatgaggatgacgaaggaaaaattaaggattttagccaattagagttgaaaccggatcac
gtcaatcgtcctctttgggcttgtgacaatggtcggatattccttgagactttctctcct
ttgtacaagcaagcttatgattttctcattgccatcgccgagcctgtttgcaggcctgag
tcgatgcacgaatacaatcttactccgcattcgctgtatgctgctgtttcggttggttta
gaaactgaaacaattatagcagttttgaacaagttatccaagaccaagcttcctaaagag
atgattaagtttatccatgaatctactgcaaattatgggaaagtgaaacttgttcttaaa
aagaatcggtactttgtggaatctccgtttccagaggtattgaagacactgctcagggat
gatggtatatctcgagcaaggatcacttctgagggtgctcatggagatggatttacaatc
agcaaagcattaggtgaaattgaaggcactcatgatgagttgctgaatcaagcagaagta
gcggctgctgcagaagagaaagaagctcatgcattcgaaattgatcctgctcaggttgaa
aatgtaaagcaacgttgcttgccaaatgctttaaattatcctatgttggaggagtatgac
ttcagaaatgatacagtgaacccagaccttgacatggaactaaagcctcaagcacaacca
cggccatatcaagagaagagccttagtaaaatgtttggaaatggtagagcaagatccggt
atcattgttctaccctgtggtgctggaaagtccctagttggcgtttcagcagcttgccgt
ataaaaaagagctgtctttgtttggcaacaaatgctgtttctgtggatcaatgggctttt
cagtttaaactatggtcaactatccgagatgaacacatttgtcgtttcacatcggatagc
aaagagagatttcgtggtaacgctggagttgttgtgacaacatataatatggttgctttt
gggggtaaacggtctgaagaatctgaaaagatcattgaagaaataagaaacagagaatgg
ggtttgctccttatggacgaggtacatgtggttcctgcccatatgtttcgaaaagtcatt
agtatcactaaatctcactgcaaacttgggctcacagccacacttgtgagagaggacgaa
agaattacagatctgaacttcctaattggtcccaaactgtatgaggcaaattggttagat
cttgtaaaaggtggatttattgcaaatgtacagtgtgctgaagtatggtgtccaatgaca
aaagagttttttgccgagtatctaaagaaagagaactccaagaagagacaggccctttat
gtgatgaatccaaataaattccgagcatgtgagtttctcataaattaccatgaaagggca
cgtggtgataaaattatagtttttgctgataatctttttgctctcactgagtatgccatg
aaactccgcaaaccaatgatatatggtgctacaagccatgttgagaggacaaaaattcta
caggcattcaaaactagcaaagacgtaaatactgtttttctttccaaggttggtgacaac
tcaattgatattcctgaagcaaatgtgataattcagatctcttcacatgctggttccagg
cgtcaagaagctcaacgtctgggtcgtattcttagggcaaagggaaagctgcaggatagg
atggcaggtggcaaagaggagtataatgcatttttttattcccttgtgtcaactgatacc
caggtatacatttatttcatgccaagccatatattattgaattattggatcatgtcgtca
cttcaaaataatacttacttaaactatcatacaaggaatttatggtgtaatgtatcttgc
tgctttcatttgcaggagatgtattactcaactaagaggcagcaatttttaattgatcag
ggttacagctttaaggtaattacaagcttgcctccatctgatgaaggatctcgcttgcac
taccatcatctcgatgatcaattggcactacttggaaaggtattgaatgctggtgatgat
gctgttggattagagcaactagaagaagatgctgatgaaatcgctcttaaaagtgctcgt
cgttctcaaggatcgatgagtgcaatgtcaggtgcaaaagggatggtttatatggagtac
agtaccgggcgtaacaaaggccaacagatcaagagcaagccgaaagatccagcaaagaga
cacttcttatttaaaaaacgatttggcccaacctaa
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