Trifolium pratense (red clover): 123913604
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Entry
123913604 CDS
T08949
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123913604
03015 mRNA surveillance pathway
123913604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123913604
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123913604
mRNA cycle factors
P-body specific factors
123913604
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Phage_blade
Motif
Other DBs
NCBI-GeneID:
123913604
NCBI-ProteinID:
XP_045820351
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All DBs
Position
LG3:complement(27593505..27602638)
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AA seq
558 aa
AA seq
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MSLSDRTKVVVRHLPPTITEASLLPLIDSAFASRYNWLSFYPAKISQKHTSYSRAYIDFK
NPDDVIEFAEFFNGHVFVNEKGTQFKVSVEYAPSQRVPKQQCSKKDARDGTIYKDPEYLE
FLQQLSKPVENLPSAEIQLEKREAERSGAGKDIPIVTPLMDFVRQKRATKGPRRSLSNGK
LSRRTVTSSNGSSSSAPSRRGYTKKRVSTTMYVARDPGKSSTVKDKSTYILVPRQGDQNL
SNKSSNIASSDGNQTFDENGIAGSNNVGKKKVLLLKGKEREIITVSDSDNMSQHHSITSS
TKTILSSTALKQNQQHEGSGRIIKNILTNNDFRQSQSSRSHSERQIQTSNLEKEKQTTRP
VHVQLILKGTDGAPENRITVHGLHVSGERQERRFRHKDRPDRSVWTSRSNGGDESLSSLA
SSQVDPLEGTCFSFTCGINLAIVDYSFDKLMYKILSFCSSQVEIFIIFVCKTGGHAELKR
DAQSARNGEVKSLGSLRASHSSENGFSRHFGRRGPIHGVKDVDGYSISSEGNHPRKSSSS
AYGSNEKQVWVQKASSGT
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgtcggatcggaccaaggtggtggtgcggcacttgcctcctaccatcaccgag
gcatctcttttgcccctaatcgactccgccttcgcctctcgctacaactggctctctttc
tatcctgccaaaatcagccagaagcatacctcatattctagagcttacattgacttcaag
aaccctgatgatgttatagagtttgctgagttcttcaatggacacgtctttgtcaatgaa
aagggaacacagttcaaagtcagtgttgaatatgctccttcgcagcgtgttccaaagcag
cagtgctctaaaaaggatgcccgtgatggaaccatatacaaagatcccgagtatctcgaa
tttcttcaacaactatccaaacctgttgagaatctccctagtgctgagattcagttggag
aaaagggaggccgaacgatctggtgctgggaaagatattcctatagttacaccacttatg
gactttgtgcgccaaaaaagagctaccaagggaccacggagatcactgtctaatggaaaa
ttgagcagaagaactgttacatcatcaaatggaagctctagttctgccccgtcaagacgc
ggttacacaaagaagagagtttccaccacaatgtatgttgcacgggacccagggaaaagt
tctactgtaaaagacaaatcaacttatattttggttcccaggcaaggtgatcaaaatctt
tcaaataaatcttcaaatatagcttcttcagatggaaaccaaacttttgatgagaatgga
attgctggaagtaataatgttgggaagaagaaagtactacttcttaaagggaaagaaaga
gaaataatcaccgtatctgattcagataacatgtcgcaacatcatagcataacatcttca
actaaaacaattcttagttctacagctctgaaacagaatcagcagcatgaaggtagtgga
aggattatcaaaaacatactcacaaacaatgattttcgacaaagtcagtcttccaggagc
cactctgagcggcagatccaaacatctaatttagaaaaagaaaaacaaaccactcgccca
gttcatgtgcaattgattttgaagggcactgatggtgcgccagagaataggattactgtg
catggtttacatgtttctggtgagagacaggagaggcgttttagacataaggatagacct
gaccgtagtgtttggacaagtcgttccaatggaggtgatgaatctttatcatccttagct
tcttcacaagtagatcctttagaaggtacatgctttagtttcacctgtggcatcaatttg
gcaattgttgattattcctttgacaaattaatgtacaaaatattatcattttgttcttca
caagttgaaatttttattatatttgtatgcaaaacaggaggtcatgcagagttgaaacgc
gacgcacaaagtgcaagaaatggggaggtaaaatctcttggaagtctccgtgccagtcat
tcatcagaaaatggtttcagtaggcattttggtcgccgtggaccaatacatggggtgaag
gatgttgatggctattcaatttcgagtgaaggaaatcatcctagaaaatctagttcctca
gcttacggttctaatgagaaacaagtttgggtccaaaaagctagttctgggacctag
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