Trifolium pratense (red clover): 123913731
Help
Entry
123913731 CDS
T08949
Name
(RefSeq) AMSH-like ubiquitin thioesterase 1
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123913731
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tpra01002
]
123913731
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123913731
04121 Ubiquitin system [BR:
tpra04121
]
123913731
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
123913731
Peptidases and inhibitors [BR:
tpra01002
]
Metallo peptidases
Family M67
123913731
Membrane trafficking [BR:
tpra04131
]
Endosome - Lysosome transport
Others
Others
123913731
Ubiquitin system [BR:
tpra04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
123913731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
pre-PUA_NIP7
Motif
Other DBs
NCBI-GeneID:
123913731
NCBI-ProteinID:
XP_045820522
LinkDB
All DBs
Position
LG3:complement(3843009..3849986)
Genome browser
AA seq
521 aa
AA seq
DB search
MMTCSSDTINIAARTQKLDVDNRFSLRIYYRIADNILKQADIFRAEKNIVDLYVMLMRFC
SLVSETIPRHRDYRTSPQSKKELLRKKLLNSVIELEKLKPLAQQKINELNSRKPYQHNGR
ENFRSNYSTDISPVKKQTMTSYNQIKAVGQTAGEFVYQGSRAQQFPYVRPVEDNMKRLSL
TFLPPKEETLSRHSILGPNGLKGQWQPPTCDKGVRYPTIIDLSPVEIPSLHQSLLQKNSL
QQSLEDGSLNKKENSISEHNGSDLESIHTQSEDCQVQHVDETPSLISFEETEDSAPIKVI
RQPSPPPVLAEVHDLMPTVSPHVDEAVCKTETPSSDSFVRGESPLQLHISTAMMGSFMKL
AKSNTNKNLETCGILAGSLKNRKFYITALIIPKQEATSSSCQATNEEEIFEAQDKRSLFP
LGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPTDSSRTHGIFRLTTPGGMSVI
RQCQQRGFHPHDQPPGGGPIYDTCTDVFLNPDLKFDVIDLR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgtgttcttcggatacgatcaacatcgctgcaagaactcagaaactcgatgtt
gataatcgattttcacttcgtatctattacagaatcgctgataatatcctcaaacaggct
gatatctttcgtgcagagaaaaatattgttgatctatatgtcatgctcatgagattttgt
agtttggtctctgagacaataccacgccaccgagattatagaacatctccacagagcaag
aaagaattattaagaaagaaattgttaaattctgtgattgaactggagaagttgaaacca
ctggcacaacagaagatcaatgagcttaacagcaggaaaccataccaacacaacgggcgg
gaaaattttcgttcaaattattcaactgatatttctcctgtgaaaaaacaaaccatgact
agttacaatcaaataaaggcagtcggtcaaactgcaggagagtttgtctaccaaggatca
agggcccaacagtttccttatgtaaggcctgtggaagataatatgaaaagactatctcta
actttcctacccccaaaggaagaaactctctccagacattctattctaggtccaaatggg
cttaaagggcagtggcaacctcctacttgtgataaaggggtgaggtatccaactatcata
gatctgtctccggttgaaattccaagccttcaccaatccttgcttcaaaaaaacagcctt
cagcaatccttggaagatggatctctgaataaaaaagaaaatagcatttcagaacacaat
ggatccgatttagaatctattcatacccagagcgaggactgtcaggtccaacatgtcgat
gaaactccttcgcttatctcttttgaagaaacagaagactctgctcctataaaagttatc
agacagccttctcctccacctgtacttgctgaagtacatgatttaatgcctacagtatca
cctcatgttgacgaggcagtatgtaagacagagactccatcgtcagatagttttgtccgt
ggcgagtctcctcttcaattacacatttcaactgcaatgatggggagttttatgaagctt
gccaagtctaacactaacaaaaatttagagacttgtggtatcctcgcaggctcgcttaaa
aacagaaaattttatattacagctctaataatcccaaagcaagaggcaacatcaagttct
tgtcaagctacaaatgaagaggaaatatttgaagcccaggataagcgatctctttttccc
cttgggtggatccatacacaccctacacaatcttgtttcatgtcatcaattgatgtacac
acccattactcatatcagattatgctgccagaagctgttgcaatagtcatggcaccaaca
gacagttcaagaacccatggtatttttcggctgacaactcccggtggcatgtcggtcatt
agacaatgccagcaacgtggctttcatccacacgatcagcctccaggtggtggtcccatt
tatgatacatgtacagatgttttcttgaacccagatctaaaatttgatgtcattgatctt
cgataa
DBGET
integrated database retrieval system
