Trifolium pratense (red clover): 123913784
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Entry
123913784 CDS
T08949
Name
(RefSeq) probable ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123913784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123913784
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123913784
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
123913784
Messenger RNA biogenesis [BR:
tpra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
123913784
DNA repair and recombination proteins [BR:
tpra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
123913784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-GeneID:
123913784
NCBI-ProteinID:
XP_045820590
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All DBs
Position
LG3:complement(39347591..39357801)
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AA seq
907 aa
AA seq
DB search
MDTTLSVLKDYFGFLSFRPYQKEVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGI
VVSPLISLMQDQVMALKQRGIKAEYLSSAQKDYTVQSKAERGQFDILFMTPEKALTIPTS
FWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRF
DITNSLKMNNPYTVVGSFDRPNLFYGVKQFNRGQSFIDEIVEEISKEVANGCSTIIYCTT
IKDVELIYKSLTEVGINAGMYHGQMNGKSREESHRLFVRDEMQIMVATIAFGMGIDKPNI
RKVIHYGCPKNLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYAADLKSENQKKAVM
ESLLAAQRYCLSATCRRKFLLEHFGEKTAADRCGNCDNCTVSKQERDLSKEAFLLMACIH
SCKGRWGLNMPVDILRGSRAKKIIDAQYDKLPLHGLGKAYQANWWKALGHQLISLGYLKE
IVNDMFRTVSVSSKGEQFLASSRPDYQPPLVLPLVGELEEEENRSTEEFKNLTASESQGF
SETDGKLYQMLLEERLKLARSVGTAPYAICGDQTIRRIALTRPSTKARLANIDGVNQHLV
TRYGDYFIQAIQKLSKELNLSLDGEVILQTNEVRKVSPVVTNKSTKLQGAKFEAWKMWHE
EGLSIQKIANFPGRAAPIQEQTVAQYLLDAAQEGLPFDWTRFCEAIGLKQDFISAIQGAI
VKVGSAEKLKPIKNELPEEITYPHIKTYLTMQTCGISLEDIQPKGHQSVKDGEAVNNASD
LSEPPLETRQTESHLESDISVKSLMEIDAVPSEPVNGCQVQKLPLACEEEFTSKRLKISE
TEEVSLIKLKATESSVVEWLKNHDEGANLNDILEHFNGSNEDSIVELLSCLECDFLIYKK
GNMYRAM
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggacaccacgctctccgttctcaaggattacttcgggtttttgagttttcggccttat
cagaaagaggttattgagaaaattattgagaaaagggattgcttggtagttatggctact
ggtagtggcaaatccttgtgttatcaagtacctccattggttgtgaaaaagactgggata
gttgtgagccctctaatatcgttgatgcaagatcaggtaatggctttgaaacagcgaggt
atcaaagctgaatatctttcaagtgctcagaaggattacaccgttcagagtaaagctgag
cgtggtcaatttgacattctgttcatgactcctgagaaggcgttaacaattcctactagt
ttctggtccaacttgctaaaggaaggaattagtctttttgctgttgatgaagcacattgt
atatcagaatgggggcatgactttagggtcgaatacaagcagttagacaagttacgtggt
gttctgttagacgttccttatgttggtctaacagcaactgctactgaaaaggttcggttt
gacatcaccaattccctgaagatgaataatccttatactgtagttggttcatttgatcgc
ccaaatcttttctatggtgtcaagcaatttaaccgtggacaatcttttattgatgagatt
gtggaagaaatttcaaaagaagttgctaatggttgttcaactataatctactgcacaaca
atcaaagatgtagagctgatatataagtcacttacagaagtaggtattaatgctggaatg
taccatggccaaatgaatggaaaatcacgagaggagtctcatagattatttgttagggat
gaaatgcaaattatggtggctacaattgcctttggcatgggaatagataaacctaatata
agaaaagtgattcactatggctgccctaagaatctagagtcctattaccaggaaagtggg
cgatgtggtagagatggtatagcttctgtttgttggctttactacacaagaagtgacttt
gcaaagggcgatttttatgctgcagacttaaaatcggaaaaccaaaaaaaagctgttatg
gaatcattgctggctgctcaacgctattgtttgtccgcaacttgcagaagaaagttcttg
cttgaacacttcggggaaaaaactgcagctgatagatgtggaaactgtgataactgcaca
gtctcgaagcaggagcgtgacctgtcaaaagaagcatttcttctaatggcttgcattcat
tcatgcaagggcagatggggccttaatatgccggttgacatccttcgcggttctcgagca
aagaaaataatcgacgctcagtatgacaagcttccacttcatggacttgggaaagcatac
caagcaaattggtggaaagcactcggacatcaattgatttctctaggttatttgaaggag
attgtcaatgacatgttcagaactgtaagtgtcagctcaaaaggagagcaatttttggcc
tcttctagaccagactatcaacctcctttggttttgccattggttggtgagcttgaagag
gaggaaaatagaagcacggaagaattcaaaaatttgaccgcttcagaatcacagggtttc
tcggagactgatggaaagctctaccaaatgcttttagaagaaagattaaagcttgcaaga
agtgtcggaacagctccatatgctatatgtggtgatcaaacaattagaagaattgctttg
acaagaccatctacaaaagcaaggctagcaaacattgatggtgttaatcagcaccttgta
acaagatatggagactattttattcaagctattcagaaactatccaaagaactaaaccta
tcattggatggagaggtaattttgcaaactaatgaagtacgaaaagtatctccggtagta
accaacaaatcgacgaagttgcaaggagcgaagtttgaagcatggaaaatgtggcatgag
gaaggtctttctattcagaagattgctaactttccaggtagagcagctcctattcaagaa
caaactgttgctcagtatctgctggatgctgcccaagaaggattaccatttgattggact
agattctgtgaggcgatagggctgaaacaagatttcatatcagcaattcagggcgctatt
gtaaaagttggatctgccgagaagttgaagcctataaaaaatgaattgccagaagaaata
acttaccctcacatcaagacttacttgacgatgcaaacctgtggaatatccttagaagac
attcaacctaaaggtcaccagtctgtcaaagacggtgaagctgtaaataatgcttcagat
ttgtcagagcctcctttagaaacacggcaaacagaaagtcatcttgaatctgacatttct
gtcaaaagtttgatggaaattgacgcagtaccttctgaacctgtcaatggttgccaggta
cagaagcttccattagcctgtgaggaggaattcacaagcaaacgactgaaaatcagcgaa
actgaggaagtgagtttaattaaattgaaagctacagagagttctgttgtagagtggctg
aaaaaccatgatgaaggggctaatttgaatgatattttggagcacttcaatggatccaat
gaagattccattgttgaactgctaagttgccttgagtgtgactttttgatatataagaaa
ggtaacatgtacagggctatgtaa
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