Trifolium pratense (red clover): 123913826
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Entry
123913826 CDS
T08949
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123913826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123913826
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123913826
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
123913826
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
CoA_trans
DUF2283
Motif
Other DBs
NCBI-GeneID:
123913826
NCBI-ProteinID:
XP_045820658
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All DBs
Position
LG1:complement(34342082..34347947)
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AA seq
297 aa
AA seq
DB search
MKLKFRMYSVVGMVGLSLGEQHFIQGGIAQDLRCDGRKRLTYRPIHVETGVIPQANGSAR
IRIGATEVIASVKAELGKPSLSQPDKGKVFIYIDCSSTAEPAFEGRGGEELSAELSTALH
CCLLGAKSGAGAGIDRTSLVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIP
SVKVTAGAASDEQPEVDISDEEFLQFDTSGVPVIITLTKVGREYIVDATPEEESQMSSAI
SISVNKKGHICGITKRGGAGLDPSVILDMVSVAQYVSGKLMNKLDSEIASAEAEDES
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcaaattcaggatgtattcagttgtaggaatggtgggtttatctctaggagaa
caacatttcatccaaggtggcattgctcaggatcttcgttgtgatggtagaaagagattg
acttatcgaccaatccatgttgaaactggagtcattcctcaggcaaacggttcggccaga
ataagaattggtgctacagaggtcattgccagtgtgaaggctgaacttggaaaaccaagc
ttatcgcaacccgacaaagggaaagtctttatatatattgattgtagttcgactgcagag
ccagcttttgagggtagagggggtgaggaattgtcagcagaactgtcaactgctcttcac
tgctgtctcttgggtgctaaaagtggagcaggtgctggaattgatcgcacttctcttgtt
gtcgaaggaaagatttgttgggatctttatattgatgggcttgttgtcagttcagatgga
aatttgttagatgctctaggtgctgcgatcaaggctgctttgagcaataccggaattcca
agcgtcaaagttacggctggtgcagcaagtgacgagcaaccagaagttgacataagtgat
gaagagtttctacagttcgacacatctggagtccctgtgatcattacactgactaaggtt
gggagggagtatattgttgacgcaacgcctgaagaggaatcacaaatgagctctgcaatt
tcaatctctgtcaacaagaaagggcacatatgtggtataaccaaacgaggcggtgcaggg
ctggatccaagtgtcattcttgatatggtctcggtggctcagtatgtaagcgggaagtta
atgaataaattggattcagaaatagcttctgctgaagctgaagatgagtcatga
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