Trifolium pratense (red clover): 123913897
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Entry
123913897 CDS
T08949
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03030
DNA replication
tpra03410
Base excision repair
tpra03420
Nucleotide excision repair
tpra03430
Mismatch repair
tpra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123913897
03410 Base excision repair
123913897
03420 Nucleotide excision repair
123913897
03430 Mismatch repair
123913897
03440 Homologous recombination
123913897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpra03032
]
123913897
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123913897
Enzymes [BR:
tpra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
123913897
DNA replication proteins [BR:
tpra03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
123913897
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
123913897
MMR (mismatch excision repair)
DNA polymerase delta complex
123913897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
123913897
NCBI-ProteinID:
XP_045820753
LinkDB
All DBs
Position
LG3:complement(34946637..34960403)
Genome browser
AA seq
1108 aa
AA seq
DB search
MNKNNSRKRSAPPPQPPPPKTKQALSLEEEFVDEDVFIDETLLSEDEESAILRDIEQRQA
LAARLAKWTRPPLSQEYLSQSRSILFQQLEIDYVIGESDRELLPNRSGPAAIIRIFGVTK
EGHSVCCKVHGFEPYFYISCPPGMRPDDISRFHQVLEARMREANRNSNVRNLVIDVQMVQ
RRSIMYYQQLESQPFLKIIVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRF
MIDCNIVGGNWIEIPVGKYKTTKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFD
IECAGRKGHFPEPTHDPVIQIANLVTLQGEGQPLIRNVMTLNSCSPIVGVDVMSFDTEEE
VLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAAALKIADFPILGRIRNSRVRVKDTTF
SSRQYGIRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISD
LQNGSAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKVL
SQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAY
NLCYCTLVTPENARNLNIPPESVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADL
KEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKL
VEDKFTTLNGYEHNAEVIYGDTDSVMVQFGASAVEEAMNLGREAAEYISGTFIKPIKLEF
EKIYFPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDR
DVPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKRDAATA
PNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPHYYLENQISKVGFIYASDFSY
VYCFLLGSFMLQPILRIFEPILKNASKELLHGDHTRSISISTPSNSGIMRFAKKQYTCIG
CKAVLSGGNRTLCSHCKGREAELYCKSVAQVSDLEILFGRLWTQCQECQGSLHQDVLCTS
RDCPIFYRRKKAQKDMAEARLQLDRWSF
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaacaactcacggaagcgttcggcgccaccgccgcaaccaccaccaccaaag
acaaagcaggcactgtccctggaagaagaattcgttgacgaagatgtgttcatcgacgaa
accctactttctgaagacgaagaatccgcaatcctccgtgacattgaacaacgccaagcc
ctagctgctcgtctcgcaaagtggactcgtcctcctctctcccaagaatatctctctcaa
tctcgtagcattctttttcagcaactcgagattgattacgtgattggagagagtgataga
gaattgttaccaaacaggtctggacctgctgctataatcagaatatttggagtaaccaaa
gaaggacacagtgtttgctgcaaggttcatgggtttgaaccatatttctacatcagctgc
cctcctggaatgagaccagatgatatctcccgtttccatcaagttctcgaggcacggatg
agagaagccaacagaaacagcaatgtaaggaatcttgttattgatgttcaaatggtgcag
agaaggagcattatgtactatcaacaattagagtcccaaccctttctcaaaattattgtt
gcactcccaacaatggttgctagctgccgtggtatacttgatagaggtattcagcttgat
ggtcttggcatgaaaagcttcatgacttatgaaagcaatgtactttttgctcttcgtttc
atgattgattgcaacatagttggcggaaattggattgaaattcctgttggaaaatataag
acaacaaaaagcttgtcctactgccagttagagtttgattgcctatattccgatttgatt
agtcatgctccagaaggggaatattcaaagatggctccatttcgcattttaagttttgac
attgaatgtgctggtcgcaaagggcatttccccgaacctacccatgatcctgtgatccag
attgctaatttggtaactttacaaggggaaggccagccattaattcgtaacgtgatgacc
cttaattcatgttcccctattgttggtgttgatgtgatgtcatttgatacagaagaagaa
gttctgctagcttggagggatttcatccgtgaagtagaccctgatattattattggatat
aacatctgcaaatttgacttgccgtatcttattgagagagccgcggccctaaaaatagca
gattttccaattctgggccgtatcaggaacagtagagttcgagtaaaagatacaactttt
tcatcaaggcagtatgggatcagggaaagtaaagaagttacagtcgaagggagagttcag
tttgatttgctccaggttatgcaaagagactacaaattaagttcttattcattgaattct
gtgtctgcacatttcctttccgagcagaaggaggatgttcatcattcaattatatctgat
cttcagaatggaagtgcagaaactagaagacgccttgctgtgtactgcttgaaggatgca
tatctgccccagcgacttttggataaattaatgttcgtttacaattatgtggaaatggca
cgggtaacaggtgtcccaatttcctttctactttccaggggccaaagcatcaaggtgctt
tctcaacttcttaggaaggcaaaacaaaagaatttggtcattcctaatgccaagcaagca
gggtcagaacaaggaacgtttgaaggtgccactgtattagaggcaagggctggattttat
gaaaagccaattgctactttagattttgcttccttgtatccgtctattatgatggcatat
aatttatgttattgcacgctggtgacccctgaaaatgcacgcaatctcaacatccctcca
gagtcagtgaacaaaacaccatctggtgaaacatttgttaaatcaaatttacagaagggt
atacttcctgaaattcttgaagagctattagcagcccgtaaaagggcaaaagcagatttg
aaggaggcaaaggatccccttgagaaggccgttctagatggcagacagttagccctgaag
attagtgcaaattctgtatatgggtttacaggggctactattggtcagttaccttgctta
gagatatcctcaagtgtaacgagctatggtcgacaaatgatcgagcacactaaaaagctc
gtggaagataaatttacaacacttaatggctacgaacacaatgccgaggtaatatatgga
gacacagattcagtcatggtacaatttggtgcttctgctgtagaagaggctatgaacttg
gggagagaagctgctgaatatattagcggaactttcataaaacctatcaaactagaattt
gagaagatatactttccatatctcctgattagcaagaagagatatgctggtttgttttgg
acaaaaccagacaattttgacaaaatggacactaaaggtattgaaacagttcgaagagac
aattgcttgttggtcaaaaacttggtaaacgactgccttcacaaaatactgattgacagg
gacgttcctggggcagtccagtatgtcaagaatgcaatttcagatcttctcatgaaccgt
atggatttatcacttctggttattacgaagggtttgacaaagacaggagatgattatgaa
gtaaagacggctcatgttgaactcgctgaaaggatgcgcaagcgagatgctgctactgct
ccaaatgttggagatagagtaccttacgttattattaaagctgccaaaggtgccaaggct
tatgagaaatcagaagatcctatctatgtgctagagaacaacataccaatagatcctcat
tactatcttgagaatcaaattagcaaggttggttttatatacgcttcagatttctcctat
gtttactgttttttattgggctcattcatgttgcagccaattctaagaatttttgagcca
attctgaagaatgctagcaaggaacttctccatggagaccacacaagatctatttctatt
tctactccgtcaaacagcggtataatgagatttgccaagaaacagtatacttgcattggt
tgcaaagctgtacttagtggtggtaatcgcactctctgctcacattgcaaaggaagggaa
gctgaactgtactgtaaatctgtggctcaagtgtcggatctagagatactttttgggagg
ttgtggacacagtgtcaagagtgccaaggttcacttcatcaggatgttctctgcacaagt
cgagattgtccaattttttatcgacgcaaaaaggcacagaaagacatggctgaagcaagg
ttgcaattggacagatggagcttctaa
DBGET
integrated database retrieval system
