Trifolium pratense (red clover): 123913928
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Entry
123913928 CDS
T08949
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04142
Lysosome
tpra04144
Endocytosis
tpra05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123913928
04142 Lysosome
123913928
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
123913928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123913928
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpra04147
]
123913928
Membrane trafficking [BR:
tpra04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
123913928
Exosome [BR:
tpra04147
]
Exosomal proteins
Proteins found in most exosomes
123913928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
TPR_COPA_B
Clathrin-link
Motif
Other DBs
NCBI-GeneID:
123913928
NCBI-ProteinID:
XP_045820807
LinkDB
All DBs
Position
LG3:complement(41499976..41510918)
Genome browser
AA seq
1731 aa
AA seq
DB search
MAANAPITMKEALTLGSVGINPQFITFTHVTMESEKFICVRETAPSNSVVMIDMNMPMQP
LRRPITADSALMNPNTRILALKAQVPGTTQDHLQVFNIETKTKMKSYQMNQQVVFWKWVT
PKLLGIVTQPSVYHWSIEGDGEPVKVFDRTANLANNQIINYRCDPTEKWLVLIGIAPGSP
ERPQLVKGNMQLFAVDQQRSQALEAHAASFASFRVTGNDKDSILICFASKTINAGQVTSK
MHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISNKYGLIYVITKLGLLFVYDME
TATAVYRNRISPDPIFLTAEASSVGGFYAVNRRGQVLLATVNEATIVPFVSGQVFYVLHM
FLIKWECLFFLYPLNTFLGILQLNNLELAVNLAKRGNLPGAEELVVQRFQELFAQTKYKE
AAELAAESPRGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLV
VNQNKKNLLENWLAEDKLECSEDLGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFD
KILIYSKQVGYTPDYMFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNL
IREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCE
KAGLFIRALQHYSELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGN
LQIIVQTAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPDLHFKYIEAAAKT
GQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLR
YIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVDECEKRNRLRLL
TQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAV
VAYRRGQCDDELVNVTNKNSLFKLQARYVVERMDADLWEKVLNPENEFRRQLIDQVVSTA
LPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFNGNFNLQNLLILTAIKADPS
RVMDYINRLDNFDGPAVGEVAVEAQLYEEAYTIFKKFNLNVQAVNVLLDNLKTIDRAVEF
AFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDSTHFLEVIKAAEDGDVYHDLVRYLL
MVRQKTREPKVDSELIYAYAKIDRLGEIEEFILMPNVANLPVVGDRLYDDTLYEAAKIIF
AFISNWAKLAVTLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNVII
QVDDLEEVSEFYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRHEKLMEHIKL
FSSRLNIPKVIRACDEQQHWKELTYLYIQYDEFDNAATTVMNHSPEAWEHMQFKDIIVKV
ASVELYYKAVHFYLQEHPEVINDLLNVIALRVDHTRVVDIMRKAGHLKLIKPYMIAVQSN
NVTAVNEALNEIYVEEEDYDRLRESTDLHDSFDQIGLALKIEKHELLEMRRVAAYIYKKA
GRWKQSIALSKKDHLYKDCMETCSQSGDRELSEDLLVYFIEKGKKECFASCLFVCYDIIR
PDVALELAWINNMIDFAFPYILQFIREYSSKVDELIKEKIEAQNEEKAKEKEEKDVIAQQ
NMYAQLLPLALPAPPMPGMGGGGGYAPPPPQQMPGMGMPPMPPYGLPPMGY
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaatgcccccatcaccatgaaagaagccttaacgttgggaagcgttgggatc
aatccacaattcatcacattcactcatgttacgatggaatctgagaaatttatatgtgtt
agagaaactgctccttctaatagtgttgttatgattgatatgaatatgccaatgcaacct
ttaagacgacctattactgctgattctgctcttatgaaccctaataccagaattcttgca
cttaaagctcaagttcctggaacaactcaggatcatttgcaagtatttaatattgaaacg
aaaacaaagatgaaatcgtatcaaatgaatcaacaggttgtgttttggaaatgggtaaca
ccaaaattgttaggcatagtcactcagccatctgtgtatcattggtcaattgaaggtgat
ggtgagccagtgaaggtgtttgatcgaacagctaatctggcaaataatcagatcatcaat
tatcgttgtgatcctactgaaaaatggttggttttgattggaattgctcctggttctcct
gagagaccacaacttgtaaaaggaaacatgcaactcttcgcagtggatcaacaacggagt
caggctcttgaagcacatgctgcctcatttgcctcgtttagagttactggaaatgataag
gattcgattcttatttgttttgcatccaagaccattaatgctggacaggttacttcaaag
atgcatgtcattgaacttggtgcccagccaggcaagccatcatttactaaaaaacaagca
gatctgttctttcctcccgactttgctgatgactttcctgtatcaatgcagatttcaaat
aaatatggcttgatatatgttatcacaaaacttgggcttttatttgtctatgatatggag
actgccactgcagtttacagaaatcgaatcagtcccgatcctatatttttgaccgcagaa
gcatcatcggtagggggattttatgccgttaatagacgcggccaagtattgcttgctact
gtgaatgaggcaaccattgtcccttttgttagtggccaggtattttatgtgttacacatg
tttttgattaaatgggaatgccttttctttttgtatccacttaatacatttttgggcatt
ttgcagttaaacaatttggaacttgctgttaatcttgctaaaagaggaaacctccctggt
gcagaagaattggttgttcagcgttttcaagaattatttgctcagaccaagtataaggaa
gctgcagagcttgctgcagaatcaccacgaggaatacttcgtactcctgacacagttgct
aaatttcagagtgtacctgtgcaagctggacaaacaccgccgctgttgcaatactttgga
actctgttaaccaggggtaaactcaatgcttttgagtcgttggaactgtcacgacttgtc
gtaaatcagaacaaaaagaatcttttggaaaattggctagcagaggacaaactggaatgc
agtgaggaccttggtgaccttgtgaagacagttgataatgaccttgcactgaaaatctat
attaaagctagagctacaccgaaagttgttgcagcttttgcggagaggagggaatttgac
aagatcctgatttattccaagcaggttggatatacaccagattacatgttccttctgcaa
acaattttacggacagatccacagggtgctgtgaattttgctctcatgatgtctcaaatg
gagggaggttgccccgttgactacaacacaataactgatctctttcttcagaggaacttg
atccgcgaggcaacagcatttttgttggatgtgctaaagccaaacttacctgaacatggt
tatcttcaaacaaaggttctggaaataaatcttgtgacgtttccaaatgttgctgatgct
atattggccaatggcatgttcagtcattatgatcgcccacgtattgcacaactctgtgaa
aaggctggccttttcatacgcgctcttcagcattatagtgagttgcctgatatcaaacgt
gtcattgtgaatacacatgccattgagccacagtcattagttgagttctttggaaccctt
tctcgagaatgggcacttgagtgtatgaaagatcttttattggtcaaccttaggggcaat
cttcagataattgttcagactgctaaggaatattctgagcagctgggagttgatgcatgc
attaaactctttgagcaatttaaatcctatgaaggactatattttttcttgggttcatac
ttgagctccagtgaggatcctgatcttcacttcaagtacattgaagccgctgctaaaact
ggacaaattaaggaggtagagcgtgtgactagggaatctaacttctatgatgctgagaag
acaaagaattttctaatggaggccaaacttccagatgcacgcccattgattaatgtctgt
gatcgttttggttttgttccagatctcacacattatctttataccaacaatatgcttcgc
tatattgaaggttatgttcaaaaggtcaatcctggaaatgctcctctagttgtaggacag
ttgttagatgatgaatgccccgaagatttcattaaaggcctcatactttcagttcgttca
cttctgccagttgagcctttagttgatgagtgtgagaagaggaatcgtcttcgcttgctg
actcagttcttggagcatcttgtgagtgaaggaagccaggatgtacatgtgcacaatgcc
ttgggaaaaatcatcattgacagcaacaacaatcctgagcattttctcacaaccaaccca
tattatgattcccgggttgtcggaaaatattgtgagaagcgagatcctactcttgctgtt
gttgcttaccgaagagggcaatgtgatgatgagcttgttaatgttaccaataaaaattcc
ttgttcaaactccaagccagatacgttgtggaaaggatggatgctgacctctgggagaaa
gttcttaatcccgagaatgagttcagaagacagttgattgatcaagtggtgtccaccgct
ttgcctgaaagcaagagtcctgaacaagtttctgctgccgtgaaagcttttatgaccgct
gatcttcctcatgaattaattgagcttcttgaaaagattgtgctacaaaattctgctttt
aacgggaatttcaatctgcaaaatttgctgatcctcactgcaataaaggcagatccttca
agagttatggattacataaataggttggataactttgatggacctgctgtgggagaggtt
gcagtggaagcacaactatatgaagaagcatatactattttcaagaaatttaatttgaat
gttcaggctgttaatgttctgctagataatcttaagactattgatcgtgctgtggagttt
gctttccgggttgaagaagatgctgtttggagccaggtggcgaaggcacaactgagagaa
ggattagtaagtgatgcaattgagtcgttcattcgcgcagatgattcaactcatttctta
gaggttataaaggctgctgaagatggagatgtataccatgacctggtaaggtatcttctc
atggttaggcagaagaccagagagcccaaggtggacagtgagctcatttatgcctatgct
aagattgatcggcttggcgaaattgaagagtttatactcatgccaaacgttgccaattta
ccagttgttggagaccgcttgtatgacgacactctatatgaggctgcaaaaattatattt
gcttttatctctaactgggctaagttagcagtcacactggttaagcttcaacagttccag
ggtgctgttgatgctgcgagaaaagcaaacagttcaaaaacttggaaggaagtttgtttc
gcctgtgttgatgctgaggaattccgcttagcacaaatttgtggtctcaatgtcatcatt
caggtggatgatttggaggaggttagtgaattttatcagaacaggggatgcttcaatgaa
ctcatatctcttatggagagtgggctaggattggagcgtgcacatatgggtatctttact
gaattgggagttctttatgcaagatatcgtcacgagaaactaatggaacacatcaagttg
ttctcaagccgacttaatattccaaaggttattcgggcatgtgatgaacagcaacactgg
aaagaacttacctacttgtacatccaatatgatgagtttgataatgctgcaaccaccgta
atgaatcactctcctgaagcatgggaacacatgcaattcaaagatattatagttaaagtt
gcaagtgtggaactctactataaagctgttcacttctacttgcaagaacatcctgaagta
ataaatgatcttctaaatgtgattgctcttcgtgtggaccatactcgtgtagtagatata
atgcggaaggctggccatctcaaattgatcaagccatacatgatcgcagtccaaagtaat
aatgtcactgctgtcaatgaagctctaaatgaaatttacgttgaggaagaggactatgac
agacttcgagaatcaacagatctgcatgacagctttgatcagataggtcttgcacttaag
attgagaagcatgaacttcttgaaatgaggcgtgttgctgcatacatctataagaaagca
ggaagatggaagcaatccattgctttgtcaaagaaagaccacctttacaaggattgtatg
gaaacttgctctcaatctggtgaccgtgaactctcagaggatttgcttgtctactttatc
gagaaggggaagaaagagtgttttgcatcatgtctctttgtctgctatgatattatacgg
ccagatgttgctcttgagttggcttggataaataacatgattgattttgctttcccatat
atcttacaatttatccgagagtattcaagcaaggtagatgagctcatcaaggaaaaaatt
gaggcacaaaatgaggagaaagctaaggagaaggaggagaaggatgtaattgctcagcag
aatatgtatgcccagttgctaccacttgctttgccagcaccaccaatgccaggaatggga
ggaggaggaggatatgcccctcccccaccacaacagatgccaggaatggggatgccacca
atgcctccttatggcttgcctccaatgggctactga
DBGET
integrated database retrieval system
