Trifolium pratense (red clover): 123913967
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Entry
123913967 CDS
T08949
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03022
Basal transcription factors
tpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123913967
09124 Replication and repair
03420 Nucleotide excision repair
123913967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123913967
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123913967
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123913967
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123913967
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
GRAM
Motif
Other DBs
NCBI-GeneID:
123913967
NCBI-ProteinID:
XP_045820905
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All DBs
Position
LG1:10850498..10863348
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AA seq
585 aa
AA seq
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MSATQQAVKRAKYKTTVKDPGTPGVIKLTLEKLIFKPNDPTSKNKLEVDFRLIKSHKHTK
EGSNKPPWLNLVHSQGSYIFEFESFPDLHICRELVGIALSKHVETTKVVSDEQLSSSEMT
LRIKLLQENSKLQKLHKELVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDT
KPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYIHST
KNTIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIF
RDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTVAEVLARRKQESDGV
IEEERRNRISKMAQIEDLQAQDDHPFAPLSIKDPRDYFDSQQANAVKTLDDSLAGKKLRC
NLSSEQVYGSLRESISNIKTNGLKHPLLSPEVAFKVLSGLTKNISSTKSNLGKSSQESVL
DILPNTIKEKLLDHWVCSQELLRHFWSSYPVTTQSLVNKARRLNDAITQINSKLEEIKVS
AQSDLRHQVSLVVHPMQQALHAALVHYDADDKKRTAKGPKPNGYV
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgacacaacaagctgttaagcgtgccaaatacaaaaccaccgtcaaagatcct
ggtactcctggcgtcatcaaattgactctagaaaagcttattttcaagcctaatgatcca
acatcgaaaaacaagctcgaagttgatttcagattaattaaaagtcataaacacaccaaa
gagggatcaaacaaaccaccgtggcttaaccttgtacattctcagggaagttacatcttt
gagttcgaaagctttccagatcttcatatttgccgggaattggttggtattgcccttagc
aagcatgtagaaaccacaaaagttgtttctgatgaacagcttagctcttccgaaatgaca
ctgaggattaagctattgcaagaaaatagcaagttgcagaagcttcataaggaacttgtg
gctagtggtaagcttacagaatcagaattttgggctacgaagaagaaattgctcgaccaa
gatgaaagcagaaagttaaaacaaaggattggatttaaaaattctttgatcttcgacaca
aagcctactagtgatggtcggataaaccaagttaaatttcaattgactcctgagataaaa
tatcagatttttgccctcaagccagcagttcaccaggcattcctcaattttgtacccagt
aagatgagtgaggtagatttctggaataaatacttcaaagctgaatatatccatagtacc
aaaaatactatagcggcagctgctgaggctgctgaagatgaggatcttgctgtttttttg
aaagatgacgagatattagaaaatgaagctcgaaagaaggttcgacgggtcgatccaact
ttagacatggaagcagaccaaggagacgattacactcatcttcctgatcatgggatcttc
cgtgatggtagcaaggaaacatctgaagctcaaaatactctgtatcggagaacgttgttg
caagatctcaacagacaaagtgaggtggttcttgaaggaaaaacattagatatagatatg
gagcatccaagaacagtggcagaagtgcttgctcggagaaaacaggaatctgatggggtt
atagaggaggagaggcgaaacagaatttctaagatggcccagattgaggatcttcaggca
caagatgatcatccatttgcaccactcagtatcaaggatcctcgtgactattttgattct
caacaagctaatgcagtaaaaactttggatgattccctagctggtaagaagttaagatgc
aatttgagttctgagcaagtctatggctctttgagggagtccatatctaacatcaaaact
aatggattaaagcatcctctattgagtcctgaggttgctttcaaggtccttagtggattg
accaaaaatatctcaagcaccaaatcaaatctcggaaaaagttcacaggagagtgtcctt
gatatattacccaacacaattaaggagaaactactagatcattgggtttgcagccaggaa
ttactgaggcacttttggtcttcctatccagtaacaacacaaagccttgttaataaggcc
agaagactgaatgatgccattacacaaataaattccaaacttgaggaaataaaggtttct
gcacagtcagacctgcgacaccaggtttctcttgttgtccatccaatgcagcaggctttg
catgctgccttggtacattacgatgctgacgacaagaaaagaactgctaaagggccaaag
ccaaatggttatgtttag
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