Trifolium pratense (red clover): 123914008
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Entry
123914008 CDS
T08949
Name
(RefSeq) serine/arginine-rich splicing factor RS40 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123914008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123914008
Spliceosome [BR:
tpra03041
]
Common components
Common spliceosomal components
SR proteins
123914008
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM_2
RNA_bind
RRM_Nup35
DbpA
DUF2129
Motif
Other DBs
NCBI-GeneID:
123914008
NCBI-ProteinID:
XP_045820931
LinkDB
All DBs
Position
LG1:5981115..5985062
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AA seq
390 aa
AA seq
DB search
MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDADAAIRALDRIEF
GRKGRRLRVEWTKGERGIRRPAERPKRSSANVRPSKTLFVINFDTYQTRTRDLERHFEPY
GKIVSVRIRRNFAFVQYDSEDDASKALEATNNSKLLDRVISVEFSSKDDDARRNGHSPDR
GRDRQRDRSRDGRRSPSPYRRERGSPDYGHGPSPYKRERSSPDYGRGNSRSRSPPYKRER
SSPAYGRRSVSPYRRERDGSEPVRGTSPSPYHKERGRTGRSPSQSPEEGERIDLRNDHGS
EHSPYDTVKDSPENGHHRRHSPDAIGNPSPYNDSRRSPSPDAKGNPSPYNDYGGSPNTVP
EPRDSPNYGGAESPMQEQYRSQSRSPPAEE
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctattttctgtggaaatttcgaatatgattgccgggagtctgagctggagcgg
ctttttagacgatatgggaaggttgatagggtggatatgaaggctggatttgcttttatc
tatatggaagatgagagagatgctgatgctgcaattcgcgctcttgatcggatagagttt
ggtcgaaaggggcgcagacttcgtgtagaatggacaaagggagagcgtggcattcgaagg
cctgctgagcgtccaaaaagatcttcagctaatgtaagaccatcaaagaccttatttgta
attaattttgatacataccagaccagaacaagggacttggagaggcactttgagccatat
ggtaagatagtcagtgtgaggatcagaagaaattttgcatttgttcagtatgattcagaa
gatgatgcttccaaagcactggaagctacaaataatagcaagttgttggatcgggttatt
tcagttgaattttcttctaaagacgatgacgctaggagaaatggacatagcccggatagg
ggccgtgatcgtcaacgtgacagaagccgtgatggaaggcgatcacccagtccttatcgt
agagaaaggggtagtcctgattatggccacgggcctagtccatataagagagagaggagc
agccctgactatgggcgtggcaacagccgtagtagaagccccccctataagagggagagg
agtagccctgcttatgggcgtcgaagcgttagtccttacagaagagagagggatggttct
gagcctgttcgtggcactagccccagtccttatcacaaagagcgtgggagaactggccgg
tctccctctcagagtcccgaagaaggagagaggatagaccttcgaaatgatcatggatct
gagcatagtccttatgacactgtgaaggatagccctgaaaatggccatcaccggaggcat
agtcctgatgcaatagggaaccccagcccatacaatgattctagaagaagccctagtcct
gatgcaaaagggaaccccagtccatacaatgattatggagggagcccaaatactgtgcct
gaacccagggacagtcccaactatggtggtgctgaaagtcccatgcaggagcaatatcgc
agccagagccggtcaccccctgcagaagaatga
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