Trifolium pratense (red clover): 123914039
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Entry
123914039 CDS
T08949
Name
(RefSeq) protein RTF1 homolog
KO
K15178
RNA polymerase-associated protein RTF1
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123914039
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
123914039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plus-3
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
123914039
NCBI-ProteinID:
XP_045820968
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All DBs
Position
LG3:complement(16954096..16957488)
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AA seq
655 aa
AA seq
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MADLENLLLEAAGRTGTAGRNRHSHPPSRRRRDGSYSDGGSDSRDDDSDDEHNYASRKPS
GSQVPLKKRLDPTDRDDDLGSQEEADDDGRSDREGDTSDESNIGDDLYKDEDDRRKLSEM
SELQREMILSDRASKKDDKSLLGKIASKREKGKAIITGKQSPLLSSSRVRASARSADRSA
KNEALNELRAKRLKQQDPEAHRRLREASRNSGPRQFSPPKRKSFTSANLSSSSHSDSDSR
SHSDEDGSTGDGGIADSDDDRGLSGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELVVGC
FVRVGIGRSKTGPIYRLCMVKNVDSSDPDRQYKLENKTTSKYLNVVWGNESSAARWQMAM
ISDSAPLEEEYKQWVKEVERSGGRMPSKQDVLEKKQAIHKIISYVYSAATVKQMLQDKKS
ASSRPMNIAAEKDRLRRELERAQGKNDEAEVERIKTRILELEASRNAKVKDAKALKLAEM
NRKNRVENFKNASELRPITGLKEGDAGYDPFSRRWTRSRNYYVANPSEKAAAGNIITAGL
IADAGSNGAGVPVTAESGVVATAIALEAAADAGKLVDTNAPVDQGTESNTLHNFELPFSL
ALLHKYGGAQGAQAGFMARKQRIEATVGFKLSENDGRRHVLTLSVGDYKRRRGLL
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggccgatttggaaaatttgcttttggaggctgcgggaagaactggcacagctggcagg
aatcgacattctcacccgccttcgaggagacgtcgtgatggctcgtattcggatggtggg
agtgactctagggatgatgattcagatgatgagcataattatgcaagcagaaagccatct
ggttcacaagttcctctgaagaagagattagatccgaccgacagagatgatgatttgggt
agtcaggaagaagcagatgatgatggacgaagcgaccgtgaaggagataccagtgatgaa
tcaaatatcggtgatgatctctataaagatgaagatgacaggcggaagctttctgagatg
agtgaacttcaaagagagatgattttgtcggatagggcttcaaaaaaggacgataaaagt
ttgttgggaaagatagcatcaaagcgtgagaaaggaaaggcaataattaccggaaagcag
tctcccctgctgtcatcatctcgcgtgcgcgcatcagccagatctgccgataggtcagcc
aaaaatgaagcattaaatgaattgcgtgcaaagcggttgaaacaacaagatccagaagct
caccgtagattgagagaggcttcaagaaactcaggtccccgacaattttccccaccaaag
cgcaaatctttcacatcagcaaatctcagtagttcaagccatagtgatagtgatagtagg
tcacacagtgatgaagatgggtcaactggggatggaggaattgctgacagcgatgatgat
aggggattatctggatctgaggggccatcctttcaggatatcaaggaaataactattcgc
aggtcaaaacttgcaaaatggtttatggaacctttcttcgaggagttagttgttggttgc
tttgtaagagttggaatcgggagatcaaaaactggacctatctaccggctgtgcatggtg
aaaaatgttgattcctcggaccctgatcgacagtataaactagagaacaaaacaacatcc
aagtacttgaatgttgtttggggaaatgaaagttctgctgctaggtggcaaatggctatg
ataagcgactctgctccacttgaagaggaatacaagcaatgggttaaggaagtagaacga
agtggtggccggatgccaagcaaacaggatgtgttagaaaaaaaacaagctatacataaa
atcatctcatatgtctactctgcagctactgtgaagcagatgttacaagataaaaagtct
gcctcgtcaaggccgatgaatattgccgctgagaaggatagactgaggagggagttggaa
agagcacaaggtaagaatgacgaagcggaagtagagaggatcaagacaagaatattagaa
ttagaggcatccagaaatgcaaaagtgaaggatgccaaagctctgaaactggctgaaatg
aacagaaaaaatagggttgagaacttcaagaatgcttctgaattgaggccaataaccggt
ttgaaagaaggggatgcaggttatgatccattttcaaggaggtggacaagatcgaggaac
tactatgttgccaatccttctgaaaaagctgctgctggaaatattattaccgctggctta
attgctgatgcaggcagcaacggagctggagtaccagtaactgcggagtctggggtggtg
gctactgccattgccttggaagctgctgctgatgctggaaagttggttgatacgaatgct
ccggtggatcaagggacagaatcaaatacgctgcacaattttgagctgccattttcgttg
gcgttacttcataagtatggtggagcacaaggagctcaagcaggatttatggcaagaaaa
caaagaatagaagcaacagttggatttaaactctcggaaaatgatggcaggaggcatgta
ctgactctgtcagtcggtgattacaaaagaagaagagggcttctttga
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