Trifolium pratense (red clover): 123915149
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Entry
123915149 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123915149
09122 Translation
03013 Nucleocytoplasmic transport
123915149
03015 mRNA surveillance pathway
123915149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123915149
03041 Spliceosome [BR:
tpra03041
]
123915149
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123915149
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123915149
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123915149
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123915149
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
123915149
NCBI-ProteinID:
XP_045822256
LinkDB
All DBs
Position
LG1:complement(38264261..38270350)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETKEEAYEEELLDYEEEDDKAPDSVGTKVNGESGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacaaaggaagaagcatacgaggaagaacttcttgattacgaagaggaagat
gataaagctcctgattccgttggaactaaagttaatggtgaatctgggaagaagggctat
gttgggatccacagttcaggattcagagactttcttctaaagccagagcttcttcgggct
attgtggactcaggatttgagcatccttctgaagtgcaacacgagtgcatacctcaagca
attcttggaatggatgtattatgccaagcaaagtctggaatgggaaaaactgctgttttt
gttctatcaactttgcagcagattgatcctgttccaggccaagtttctgctcttgttctg
tgtcatacaagggaattagcataccagatatgccatgagtttgaaaggttcagcacctac
ttgcctgatctcaaggttgctgtcttttatggtggtgtcaacattaaagttcacaaggat
ctgctgaaaaatgaatgccctcatattgtcgttggtacacctggaagaatactagcattg
gccagggataaggacctttctttgaagaatgttaggcatttcattttggatgaatgcgac
aagatgctggaatcactggacatgaggaaagatgtgcaagatattttcaagatgactccc
cacgataagcaagttatgatgttttctgcaacactcagcaaggaaattcgcccagtctgc
aagaagtttatgcaagatccaatggaaatttatgttgatgacgaagcaaagttgaccctt
catggtcttgttcagcactacatcaaattgaaggaggaggagaagaaccgaaagttgaat
gatcttcttgatgcactggacttcaatcaagttgtgatctttgtgaaaagtgtcagcaga
gcagctgagctggacaaactacttgtggaatgcaattttccatccatatgcattcattct
ggaatgtcccaggaagaaaggttgaagcggtataaaggttttaaggagggccatacaaga
attcttgtagcaacagatttagttggcaggggaattgacattgaacgtgtgaatatagtg
ataaactatgacatgcctgactctgcagacacatacttgcacagggttggccgagctgga
aggtttggcaccaaaggccttgcaattacatttgtttcatgttcaagcgatgttgatgtt
ctcaataatgttcagtcccggtttgaggtggatataaaacagcttcctgagcagattgat
acatctacctacatgccatcataa
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