Trifolium pratense (red clover): 123915692
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Entry
123915692 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123915692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123915692
03009 Ribosome biogenesis [BR:
tpra03009
]
123915692
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123915692
Spliceosome [BR:
tpra03041
]
Complex A
U1 snRNP components
U1 related factors
123915692
Complex B
123915692
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Helicases
123915692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
PRAI
Motif
Other DBs
NCBI-GeneID:
123915692
NCBI-ProteinID:
XP_045822852
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All DBs
Position
LG3:complement(39749742..39757943)
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AA seq
568 aa
AA seq
DB search
MSYVPPHLRNAGSTTTTTTTAATRLSSTGTLDNNHHHHHHNNNNLAFSNSHSNTPSLFNA
SRRTSAAPPQSRINAVPDTVFPNWQPSERVSRMNPDMIEEVRLRLNLDVTVSSDSPAAPG
PIESFNDMCLNPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIP
MIQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKTAIVVGGTNIEKQ
RSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLP
EKHQTLLFSATMPVEIEALSKEYLTNPVQVKVGKVSSPTTNVSQTLVKVSESEKIDRLLD
LLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALH
DFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFY
TDRDMFLVSNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIALSRHLGSGAAS
INIEDKYRFMITATNSKREGAADSAWDD
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgttcctccacacttgagaaacgccggttcaaccaccaccaccactaccacc
gccgcaactagactttcatcaaccggaaccctagacaacaaccaccaccaccatcatcac
aacaacaacaacctcgcattctctaactcacattccaatactccttctctcttcaatgcc
tctcgccgtacctccgccgctcctccgcagtcgcggattaacgccgttcctgatactgtt
ttccctaactggcaaccttctgaacgtgtttctcgcatgaaccctgacatgattgaagag
gtccgcttacggcttaatcttgatgttactgtttcgtctgactctcctgctgcacctgga
cctatagaatcgtttaatgatatgtgtttgaatccaagtatcatgaaggacattgcttat
catgaatacaccaggccaacttctatccaggcacaggccatgcctattgctctcagtgga
agggatcttttgggttgtgctgaaactggtagtgggaagactgcagctttcacgattcct
atgatacagcattgcttggtccagcctccaattcggagaggagatggtcccctggcatta
gttttggctcctactagagaacttgctcagcaaatagaaaaagaggtccaagcttttagc
aggtctctcgagtcattaaaaactgccatagttgtaggtggtactaacattgaaaagcag
agatcggaactaagagcaggagttgaaatagcagttgccacccctgggagattcattgac
cacttacaacaaggcaacacttctctctcaagaatttcttatgttgttctagacgaggca
gatagaatgcttgatatgggttttgaaccacagataagggagataatgagaagtcttcca
gagaagcatcaaacactgctgtttagtgcaactatgcctgtggagatcgaagcattatca
aaggagtacttaactaaccccgtgcaagttaaggtgggaaaagtgagcagtccaacaact
aatgtttcacaaactcttgtaaaggtttctgaaagtgagaagattgaccgactcctagat
ttacttgtagaggaggcatcacaagctgaaaagtgtggtcatccatttccattgacaatt
gtgtttgttgagagaaagacaaggtgtgatgaagttgctgaagcattggttgctcaggga
ttatccgcagtttctctgcatggtggacgcagtcagagtgaaagagaggctgctttgcat
gactttcggagtagctcaaccagcattttggttgccaccgatgttgcatctcggggtttg
gatgtcacaggagtgtcacacgtcataaatcttgatcttccaaagaccacagaagattat
atacaccggattggaaggacgggacgagcaggatcaactggcatagccacttccttttac
acagatcgtgacatgttccttgtgtcaaatataaggaaagcaatagctgatgctgaatct
gggaacgctgtggcattcgctactggaaaggttgccagaaggaaggagaaagaagcagca
gctgcacacaaagaggcaaacattgctttatctagacaccttggatcaggagcagcttca
attaacattgaagataagtatagattcatgattactgccacaaacagtaaaagagagggt
gcagcagatagtgcatgggatgattga
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