Trifolium pratense (red clover): 123915876
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Entry
123915876 CDS
T08949
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 27-like isoform X1
KO
K11851
ubiquitin carboxyl-terminal hydrolase 30 [EC:
3.4.19.12
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tpra01002
]
123915876
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123915876
04121 Ubiquitin system [BR:
tpra04121
]
123915876
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
123915876
Peptidases and inhibitors [BR:
tpra01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
123915876
Membrane trafficking [BR:
tpra04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
123915876
Ubiquitin system [BR:
tpra04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
123915876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Zn_ribbon_DUF2089
Polysacc_synt_2
Motif
Other DBs
NCBI-GeneID:
123915876
NCBI-ProteinID:
XP_045823104
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All DBs
Position
LG3:3835635..3839891
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AA seq
489 aa
AA seq
DB search
MPLISSLASLLQELSSVSTEKVILSPTKLMHAMSSYIPDFDLTSQQDAAEAFVHLMSSLR
EESGGCYAPKISSLADIFASNNRILTPIQTEWQSEPERWQRLFLGPFDGILNSSLTCQSC
SSQISNKFESFDCLPLSPVLSNSYTIRVGCTLVDCLKQFIVAEHIENYHCSHCWHNAAIK
YLTLMEGNKVELGKLKRCSDEEFCECRKTYNLENLPWLNRFSRALKQLSIARSPRILCIQ
LKRVHMNNFGESFKLQGHISFPLTLDVSSFMTTRPGVNIQKEDVQSLPLNPQYNRINSLP
NHSNLHSEIRTIRFSGIYGESKEQIDADALIDDVVISSTSRQALLNEFPCSSSSENTHSN
TQSQSIDTVGQNFLYICIHFTLNHEILYILAFFLSSYILWFIQVDASCNSDSQDTCLYQL
VSVVEHFGRAGGGHYTVYRCVRSESSDVSGDQHSMSWFCVSDSQVRSVSVEDVLSAEASL
LFYERIPNS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcctcttatatcttctctggcttcattattacaagagctgagctcagttagtaccgaa
aaggttatattgagtccgacaaagttgatgcatgctatgtccagctacattccagatttt
gatctgacgagccagcaggatgctgctgaagcgtttgttcacctaatgtcctctttgaga
gaagaatctggaggttgttatgctccaaagataagttctttagcagacatttttgcttct
aataatagaattcttactccaatacagacggagtggcaaagtgagccagaaagatggcag
cgcctcttccttggaccctttgatgggattcttaatagcagcttaacttgtcaaagctgt
tcgtcccagatctcaaataaatttgaaagttttgattgtttgcctctttcacccgtgctt
agtaatagttacactataagagttggttgtacacttgtggattgcctgaagcagttcatt
gtagctgaacacattgaaaactaccactgcagccactgttggcataatgctgcaatcaag
tatcttaccttgatggaaggaaacaaggtagaactcggaaaacttaagagatgttctgat
gaagaattctgtgagtgccgaaaaacttataatcttgaaaatctaccatggttaaatagg
ttttcacgtgctttgaagcagctaagtattgctcgaagtccaaggattttatgcatccag
ctgaaaagagttcacatgaataattttggagaatcatttaaactacagggccatatttct
tttccattgactttggacgtgtcctcattcatgacaactagaccaggagtaaatatacag
aaagaagatgtacaaagtctgccattaaatccgcagtataacagaataaactctttgcca
aaccatagcaacctgcattctgagataagaacgatcagattcagtggcatttatggagaa
tcgaaagagcagatcgatgcagatgctcttattgatgatgtagttatctcctctactagt
agacaggcacttcttaatgaatttccctgttctagctcttcagaaaacactcactcaaac
acacagtcgcaatccattgacacggttggtcaaaattttctgtatatatgcattcatttt
acattgaaccatgaaatcctgtatatccttgcattctttttgagttcttacatattgtgg
tttatacaggtggatgcttcttgtaattcagattctcaagatacatgtttgtatcaactt
gtttctgttgtggaacattttggaagagcaggaggagggcattacactgtttacagatgt
gtgagatcggagtcctcagatgtctctggtgatcaacattcaatgagctggttttgtgtt
tcagattctcaagtgcgttctgtttcagtggaagatgttctttctgccgaggctagcttg
cttttctatgagagaataccaaatagctaa
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