Trifolium pratense (red clover): 123916505
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Entry
123916505 CDS
T08949
Name
(RefSeq) coatomer subunit alpha-1-like isoform X1
KO
K05236
coatomer subunit alpha
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123916505
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpra04147
]
123916505
Membrane trafficking [BR:
tpra04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
123916505
Exosome [BR:
tpra04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123916505
Exosomal proteins of bladder cancer cells
123916505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
TPR_COPA_B
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_IFT122_1st
WD40_RFWD3
NBCH_WD40
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_At4g14310
BPL_LplA_LipB_2
Motif
Other DBs
NCBI-GeneID:
123916505
NCBI-ProteinID:
XP_045823926
LinkDB
All DBs
Position
LG3:complement(22391254..22398969)
Genome browser
AA seq
1236 aa
AA seq
DB search
MILIGSCSERASEREKMLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI
DRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE
NPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDIVVSASLDQTVRVWDI
GSLKRKAGPPSDDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD
DRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQ
TFRREHDRFWILSTHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYE
FSTQRETQVLTIRRPGSLSLNQSPKTLSYSPTENAILLCSDVDGGSYELYCIPKDSTIKD
SFGRGDMQEPKKGLGGSAVFVGRNKFAVLEKSSNQVLFKNLKNELGKKIVLPIATDAIFY
SGANSLLCRSEDRVFIFEHQQRVVAGDLQTPFIKYVVWSNDMESVALLSKHAIVIANKKL
VHQCTLHETIRVKSGAWDDHGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVVGNTI
FCLGRDGKNKAITVDATEYIFKLSLLKKRYDHVMNMIRNSQLCGQAMIAYLQQKGFPEVA
LHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTK
NFERLSFLYLITGNVEKLSKMLKIAEVKNDVMGQFHNALYMGDIRERVKILENVGHLPLA
YITASTHGLHDIAERLAAELGDNVPSLPEGKVPSLLIPPSPVLCCGDWPLLRVMRGIFDG
GFSNAEQDADDDELVDAAGDWEGLDDMVDGFQNGDVTGILEDVEGAEDGDEEGGWELEDL
ELPPEADTPKASVSTRSSVFVAPTPGMAVSQIWTQRSSLAADHAAAGNFDTAMRLLNRQL
GIKNFAPLRSMFLDLHSASHSYLRAFSSAPVVPLAVERGWTESSSPNVRGPPALPFKLSQ
LDEKLKAGYKSTTAGKFTDALRTFVNILHTIPLIVVESRREVDDVKELIIIVKEYVLALQ
MELKRREIKDNPARQQELAAYFTHCNLQTPHLRLALLNAMTVCYKAKNLATAANFARRLL
ETNPSIENQAKTARQVLAAAERNMTDATELNYDFRNPFVICGATYVPIYRGQKDVSCPYC
TSRFVPTQEGQLCTVCELSVVGADASGLLCSPSQIR
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgattttgattggatcgtgcagtgagcgagcgagcgagcgagagaagatgttaacgaag
tttgagacgaaaagtaacagagttaagggattgagtttccatagcaaaagaccatggata
cttgcgagtcttcacagtggtgtgatccagctatgggattatcgaatgggaacgttaatt
gatagatttgatgaacatgatggacctgttagaggcgttcattttcacaattctcaaccg
ctttttgtatctggaggggatgattacaagatcaaggtctggaactataagatgcatagg
tgtttgttcactcttctaggacaccttgattacattcgtactgtgcaatttcatcatgag
aacccatggattgtgagtgccagtgatgatcaaaccattcgcatctggaactggcagtca
cgtacctgtatatctgttttaactgggcacaaccactatgttatgtgtgcttcattccat
cctaaggaggatattgttgtgtcagcctccctggatcagactgttcgtgtttgggatatt
ggttctctcaaaaggaaggctggacctccttccgatgatattttgcgattgagtcagatg
aacaccgatctttttggtggtgtcgatgccgttgttaagtacgtgttggaaggtcatgac
cgaggtgttaactgggctgcttttcatcctacactgcctcttattgtctcaggagctgat
gaccgtcaagtgaaactttggaggatgaatgatactaaggcatgggaagtggatactttg
agaggtcacatgaataatgtttcatgtgttatgttccatgccaaacaggacatcattgtg
tccaattctgaggataaaagtattcgagtatgggatgcaacaaagaggactggaattcaa
acattccgcagggaacatgatcgattttggattctctcaacgcatcctgaaatgaatctg
ttggcagctggccatgacagtggcatgatagtcttcaagctggagagggaaaggcctgcc
tttgcagttagtggtgattccttgttctacacaaaggaccgctttttgcggttctatgaa
ttttcaacacagagagagacacaagtgcttactattcggagacctggttctttaagcctg
aatcaaagtcctaagactctttcctatagtcctactgaaaatgcaattcttctctgttct
gatgtggatggtggatcttatgagttgtactgcatacccaaagatagcacaattaaggac
agttttggtaggggtgatatgcaagaaccaaagaaaggtcttggaggatcagcagtcttt
gtgggtaggaataagtttgccgtgcttgaaaaaagcagcaaccaagtactatttaaaaac
ctgaagaatgagcttggaaaaaaaattgtgcttccgattgccaccgatgctatattctat
tctggggcaaacagcttgctttgtaggtctgaggatagggtgtttatatttgaacatcag
cagagggtcgttgctggggatcttcagacccctttcatcaagtatgtagtctggtctaat
gacatggaaagtgttgctttactcagcaaacatgcaattgtcattgctaacaagaagctg
gtgcatcagtgcaccctccatgagacaattcgtgtaaagagtggagcctgggatgaccat
ggcatttttatttacacaacattaaatcatatcaaatactgcctcccaaatggagacagt
gggataataaaaacactggacgtcccaatttatatcacaaaggttgttggcaataccatc
ttctgcttgggtcgggatgggaaaaacaaagctataaccgttgatgctacagagtatatc
tttaagctttccttgttgaagaaaagatatgaccatgttatgaacatgataaggaattca
caactttgtgggcaagctatgattgcttatctacaacagaaaggatttcctgaggttgcc
ctccattttgtgaaagatgagagaattcggttcaatttggctttagagagtgggaacatt
caaattgcagttgcatcagctacagcaattgatgagaaagatcactggtaccgattggga
gttgaagctcttcgacaaggcaatgctggtatagtagagtatgcatatcagaggaccaaa
aattttgagagattatctttcctttatctcatcactggtaatgttgagaaactttcaaag
atgttgaaaattgctgaagtcaagaatgatgtcatgggccagtttcacaatgccttatat
atgggtgatattcgagagcgtgttaagatcttggagaatgtgggccatttgcctcttgct
tatataactgcatcaacccatgggctacacgacattgctgaaaggcttgcagctgaattg
ggggataatgttccatctttgcccgaggggaaagtaccatctctcttgatacctccatca
cctgtactgtgctgtggtgattggccccttcttagggtcatgcgaggcatatttgatggt
gggtttagcaacgccgaacaagatgctgacgatgatgagcttgtggatgctgcaggtgat
tgggaggggctcgatgacatggttgatggatttcaaaatggagatgttactggaattttg
gaagatgtagagggggccgaagatggcgatgaagagggtgggtgggagctggaagattta
gaactcccccctgaagctgacactccaaaagcttctgtcagtacgcggtcttcagttttt
gtggccccaacacctgggatggcagttagtcagatatggactcagagatcatctcttgct
gctgatcatgcagctgctggcaattttgatactgctatgagattactcaacaggcagctt
ggaataaaaaactttgcccccttgagatccatgttcctagatctccattctgccagtcac
tcttatctgcgcgccttttcatctgctccagttgtaccccttgctgttgaaaggggttgg
actgagtcgtctagtccaaatgtgagaggcccaccggcacttcctttcaaattgtctcaa
ttagatgaaaagctcaaagctggttataagtcaacaaccgctgggaaattcactgacgct
ctccgtacatttgtcaatattctccatacaattcctctgattgtcgttgagtcaaggagg
gaagtggatgatgtaaaggaattgataatcatagtcaaagagtatgttcttgctctgcag
atggaactgaaaagaagggaaataaaggacaatccagcacgccaacaggaacttgcagca
tatttcactcactgcaatcttcagacacctcacttgaggctagctttattgaatgcaatg
actgtctgctacaaagcaaagaatcttgccacagctgctaactttgccaggagactactt
gagaccaatcctagcattgaaaaccaagctaagacagcaaggcaagtgcttgcagctgca
gaaaggaatatgactgatgccacagagttgaactatgatttccgaaacccatttgtaatt
tgtggggcaacctatgtgcccatttatcgtggacagaaggatgtatcttgcccatactgt
acttcccgttttgtaccaacccaggaggggcagctatgcactgtgtgtgaactttcagtg
gtgggtgcagatgcttctggattgctctgttctccttcacagattcgttga
DBGET
integrated database retrieval system
