Trifolium pratense (red clover): 123916657
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Entry
123916657 CDS
T08949
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
123916657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpra04121
]
123916657
03036 Chromosome and associated proteins [BR:
tpra03036
]
123916657
Ubiquitin system [BR:
tpra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
123916657
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
123916657
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR3_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR41
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
MIOS_WD40
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
123916657
NCBI-ProteinID:
XP_045824130
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All DBs
Position
LG3:complement(31189929..31191499)
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AA seq
342 aa
AA seq
DB search
MENSTQESHIRSENSVTYDSPYPLYAMALSPNTNSHPQQRIAVGSFIEEYTNRIDILNFN
PENFSIKPQPSLSFDHPYPPTKLMFHPATNSSLQKTSSDLLATSGDYLRLWEVRENSVEA
LSLFNNSKTSEFCAPLTSFDWNEIEPKRIGTSSIDTTCTIWDIERGVVETQLIAHDKEVY
DIAWGESRVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKKDLRYMATIL
MDSNKVVILDIRSPTTPVAELERHRAGVNAIAWAPRSSKHICSAGDDTQALIWELPTVAG
PNGIDPMTMYSAGYEINQLQWSAAQPDWIAIAFANKMQLLRV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcaactcaagaatcacacatccgatccgaaaactccgttacctacgattcc
ccttatcctctctacgccatggctctttctccaaacaccaattcacacccacaacaacgc
atcgctgttggtagtttcatcgaagaatacaccaaccgcatcgatattctcaatttcaac
cctgaaaatttctcaatcaaacctcaaccttcactttccttcgatcacccttatccacct
accaaactcatgttccatcccgcaacaaattcatctctccagaaaacctcctccgacctc
cttgctacttccggtgactatcttcgtctttgggaagttcgtgaaaattcggttgaggct
ctttctcttttcaataatagtaaaacaagtgagttttgtgctccgttaacgtcgttcgat
tggaatgaaattgagccgaaacgaattggtacttcaagcattgatactacttgtacaatt
tgggacattgaaagaggtgttgttgaaacgcagcttattgcacatgataaagaggtttat
gacattgcttggggtgaatcgagggtttttgcttcggtttctgctgatgggtctgtcagg
atatttgatttgagggataaagagcattcaactattatctatgagagtcctcaaccagat
acccctttgcttcgtttggcttggaacaagaaggatttgaggtatatggctacaattttg
atggatagtaataaagttgtgattttggatattaggtcaccgactacgcctgtggcggaa
ttggagagacatcgtgctggtgttaatgctattgcttgggctccaagaagttctaagcat
atttgttctgctggggatgatacacaagctcttatttgggagttgcctactgtggctggt
ccaaatgggattgatccaatgactatgtattctgctggttatgaaattaatcagcttcaa
tggtctgctgctcagcctgattggattgcaattgcttttgcgaacaagatgcagcttttg
cgggtttga
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