Trifolium pratense (red clover): 123917339
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Entry
123917339 CDS
T08949
Name
(RefSeq) THO complex subunit 5A
KO
K13174
THO complex subunit 5
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123917339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123917339
03041 Spliceosome [BR:
tpra03041
]
123917339
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
123917339
Spliceosome [BR:
tpra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123917339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
123917339
NCBI-ProteinID:
XP_045824987
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Position
LG3:complement(63987..69886)
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AA seq
805 aa
AA seq
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MEDGEIEEGSFPMAEEEQQQQTFPPHSSEDNQSEEESPYETLHNSKSSIESIISDILSIK
KQAKPKQLLRDLVTQMFLHFITLRQANRSILIEEDRVKMETERAKAPVDFTTLQLHNLVY
EKSHYLKAIKACKDFKSKYPDIDLVPEEEFFRDAPKDIKDSVLSKDNAHNLMLKRLNFEL
YQRKELCKHHAKLEQKKKILLETIANRKKFLTSLPSHLKSLKKASLPVQNQLGMMHTKKL
KQHHSAELLPPALYVIYSQLLAQKEAFVEPIDLEIVGSLKDAQAFARNQANKDTGISTVM
ESSKLEDDVHDDEEDGQRRRKRPRRVEVKENHDQGGLFKSHPLKIIIHVYEDESSDPKPA
KLITLKFEYLVKLNIVCVGIEGSSDGPDNDILCNLFPNDTGLELPHQSAKLFVQDVTTFN
TQRTSRPYKWAQHLAGIDFLPEVSPLLPADKSEDVVSGLSLYRQQNRVQTILQRIRSRRK
AQLALLEQLESLTKLEWPVLSCKSVPWALHTPLCKLDGWSSIRALPVPGEASSPNIIDKE
EHVQESMDVDVIENSGVTKEEPDSMTEDGELPTLLPKTTKFDHSTQASLISKSITPSLNK
VRSQSFKKVDDSSDFLLDTDSDFDEPAQIESEHENIISEYLARKSLSWMESGVKEFLLVL
SSKTNVVERNVNLEAKIKISMEYPLRPPHFALSLCCKPSGENHLENDGLEWYNELRAIEA
EVNLHMLKTLPANEHNHVLAHQVNCLAMLFDYYLDEGSSSERTNCTTLVDVGLCKPVSGG
FLGRSFRGRDHRKTIAWKDTKFTSG
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggtgagatagaagagggatcattccccatggcagaggaagaacaacagcaa
caaacctttcctccccattcctcagaagataaccaatcggaagaagaatcaccatacgaa
acacttcacaacagcaaatcttccatcgaatccatcatctccgatatcctctccatcaaa
aaacaagctaaacctaaacaactccttcgagatctcgttactcaaatgttccttcacttc
atcactctccgtcaggcgaatcgttctattttgattgaggaagatcgtgttaaaatggaa
acggaacgggccaaggcgccggtggattttacgacactgcagcttcataatttggtctat
gagaagagtcattaccttaaagcgattaaggcttgtaaggactttaagtcaaagtatcct
gacattgaccttgtgcctgaggaagaattttttcgtgatgctcctaaagatattaaggat
tcggttttgtcgaaagataatgctcataatttgatgctcaagaggctcaattttgagcta
taccagcgtaaagagctttgcaagcatcatgcgaaactggaacagaaaaagaaaatcctt
ttggagactattgcaaaccgaaagaagttcctgacaagtctcccttcacatctcaagtct
ctcaagaaagcatcattgcctgttcaaaaccaactaggaatgatgcatacaaagaaacta
aagcagcatcattcagcagagttgcttccgccagctctttatgtgatttactcacagcta
ttggctcaaaaggaggcctttgtagaacccattgatctggagattgtaggaagcctgaaa
gatgctcaagcttttgctcgcaatcaagccaacaaggacactggcatttccactgttatg
gagagttccaaattggaagatgatgttcatgatgatgaagaagatggtcagagacgtaga
aaaaggccaagaagggtagaagtcaaggagaaccatgaccaagggggtctattcaaaagt
cacccacttaagatcattatccatgtgtatgaagacgagtcttctgatcctaagcctgcg
aaactcatcactctgaagtttgagtacctggtgaagttgaatattgtatgtgttggaatc
gaaggatctagtgatggtcctgacaatgacatcttatgcaatttattccccaatgataca
ggacttgagcttcctcaccagtcagctaaactctttgttcaagatgttacaacattcaat
actcaaagaacttcacgtccttacaaatgggctcagcacctggcaggaattgatttcttg
cctgaggtgtctccattgcttcccgctgacaagagtgaagatgttgtatctggtctttca
ttatatcgccaacagaaccgagttcagacaattctgcagagaattcgctcgaggagaaaa
gctcagttggctcttctggaacagctagaatcacttacaaagcttgagtggcctgttttg
tcctgcaaaagtgttccatgggctttgcacactcctttgtgcaaattggatggctggtca
tcaataagagccctacctgtacctggtgaagcttcatctccgaatatcattgataaagag
gagcatgttcaggaatcaatggatgttgatgtaattgaaaattccggtgtcacaaaagaa
gaaccggatagtatgacggaagatggggagcttcccactttacttccaaagacgactaag
tttgatcactccacacaagctagcttaatttcaaaaagtatcactccttcgcttaataaa
gttaggtcacagagtttcaaaaaagttgatgatagttctgatttcttgcttgacactgat
agcgattttgatgagcctgcacaaattgaaagtgaacatgaaaatatcatatcagagtac
cttgccagaaagtctctttcgtggatggaatctggtgtgaaggaatttttgcttgttctc
agcagtaaaaccaatgtggttgagagaaatgtgaatttagaagctaagatcaagatcagt
atggaatatcctctaaggcctccacattttgcactgagtctttgctgtaaaccttctggg
gagaaccatttggagaatgatggattggaatggtacaatgaacttcgcgcaatagaagcg
gaggttaacttacacatgctaaagacactacctgccaatgaacataatcacgtattggcc
catcaagtgaattgtcttgccatgctgtttgactattatttagatgaggggtcatcatct
gaaaggacaaattgcaccaccttggttgatgttggcttatgcaagcctgttagtggtggg
ttcctgggaagatcttttagaggaagggatcaccggaagacgatcgcctggaaagacaca
aaatttacttcaggctga
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integrated database retrieval system