Trifolium pratense (red clover): 123917481
Help
Entry
123917481 CDS
T08949
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123917481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123917481
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123917481
Spliceosome [BR:
tpra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123917481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
PWI
AAA_30
SRP54
nSTAND3
T2SSE
AAA_16
Cas3-like_C_2
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
123917481
NCBI-ProteinID:
XP_045825169
LinkDB
All DBs
Position
LG3:49578706..49595511
Genome browser
AA seq
1053 aa
AA seq
DB search
MASDDNLKTWVSDKLMSLLGYSQPTVVQYMIGLSKQATSPADLVGKLVEFGFSTTDTRTF
AEEIFSRVPRRSSGLNQYQKQEREAAMLARKQGTYTILKDDDNIDDDHTVGGDDKSSITT
ASTSRKPDSHKKRFRKKTEVQDDQDDEVVSRRERERQVKRRTSHDEESGSESEEERLKDQ
REKEELVQHMRERDAAATRKLTEQKLTRKEAEEAIRRSNAAEQDDMHALRKYSRQEYLKK
REEKKLEELRDDIEDEQYLFDGVKLSEVEQREIRHKKELYELIKKRSEEDDNVNEYRMPD
AYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLNYGSKNKKQAS
DDYQFVFEDQIDFIKASVMDGDKFDYDEMADSIEKSKAKSESEALQAERKKLPIYTYRDE
LLQAVQDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPRRVAAMSVAARVAHE
LGVKLGHEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLS
TDILFALVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHFTKAPE
ADYLDAAIVTALQIHVTQPPGDILIFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIY
ANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPKTGMES
LLVSPISKASAMQRAGRSGRTGPGKCFRLYTAYNYQNDLDDNTVPEIQRTNLTNVVLTLK
SLGIHDLLHFEFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMI
VVSEKYKCSEDIISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYNS
WKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTTNTNDLDAIKKSITSGF
FPHSAKLQKSGAYRTLKHAQTVHIHPSSGLAQILPRWVVYHELVLTTKEYMRQITELKPE
WLLEIAPHYYQQKDVEDTSSKKMPRGEGRAGAT
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgatgacaatctaaagacatgggtatcagataagttgatgtcactactggga
tattctcagcccacggttgtacagtacatgattggactatccaagcaagctacttcacca
gctgatttagtaggaaaactagtggagtttgggttctcaacaacagacacccgaacattt
gcagaagaaatcttctcaagagttcctcgtagatcgtccggcttaaatcaatatcaaaaa
caagagagagaagctgcaatgctggcaaggaagcaggggacttacacaattttgaaggat
gatgacaatatcgacgatgaccatactgttggtggtgatgataaatcgtcgataaccact
gcttctacatctagaaagccagacagtcataaaaaacgtttcaggaagaaaactgaagtt
caagatgatcaagatgatgaggtagtttcaaggagagaaagggaaagacaagtcaagaga
agaacttcccatgatgaagagagtggttcagagtcagaagaagaaagattgaaagatcaa
agagagaaggaggaattagtgcagcatatgagagaaagagatgctgcagcaacacggaag
ttgactgaacaaaaattaactcgaaaggaggcagaagaagcaattcgaagatctaatgct
gcagagcaggatgatatgcatgctttgagaaagtattcaaggcaagaatatttaaagaaa
agggaggaaaagaaattagaagaactgagagatgatatagaagatgagcaatatctattt
gacggtgtgaagctttcagaagttgaacagcgtgagataaggcacaagaaagagctatat
gaacttataaaaaagcggtcagaggaggatgacaatgtgaatgagtatagaatgccagat
gcttatgatcaggaaggcggcgttaatcaagaaaaaagattttctgtggctatgcagcgt
tacagggatacacatgctgaggaaaagatgaatccatttgctgaacaagaggcatgggag
gaacatcaaatcggaaaggcaactctgaattatggttccaaaaataaaaaacaagcctct
gatgattaccagtttgtcttcgaggatcagattgattttattaaggcatcagtgatggat
ggagataagtttgattacgatgagatggcagattcaattgaaaagtccaaagcaaagtca
gaatcagaggcacttcaggcggagaggaaaaaattaccaatttatacttatcgggatgaa
ttgctccaagctgttcaggaccaccaggtacttgtaattgttggtgaaaccggttctgga
aagactacacaaattccccaatatctccatgaagctggctacacaaaacatggaatgatt
gcatgtactcagccacgtcgtgttgctgctatgagtgtggctgctcgagttgctcatgaa
ttaggagttaaactagggcatgaggtcgggtactccatccgttttgaggattgcacatca
gacaagactattctgaaatatatgacagatggaatgttactgagggaatttcttggtgag
cctgatctggcaagttatagtgttgtgatggtggatgaggctcatgaaagaacactctca
actgatattttgtttgcattggtaaaggatatttctcgcttccgacctgatctcaagttg
ctgatatcaagtgctacacttgatgcagaaaagttcagtgattactttgattctgctcca
atattcaaaattccagggagaaggtatccggttgaaatacactttaccaaagcaccagaa
gctgactacttagatgcagctattgtcacagcgcttcaaatccatgttactcaacctcct
ggagatatattgatattccttactggtcaagaagaaattgaaacggccgaagaaatcttg
aagcatcgaactaggggcttagggaccaaaattgctgaattaattatatgtcctatatat
gccaatctaccaactgaattacaagctaaaatatttgaaccaactcctgaaggggcacgg
aaggttgtccttgctaccaatattgcagaaacatcattgacaattgatggaataaagtat
gtcattgatccaggatttgttaaaatgaaaagttataatccaaagacaggaatggagtct
ttactagtgtctcccatctcaaaagcctcagcaatgcaacgagccggtcgatctggaaga
acaggtcctggaaagtgcttccggttgtatactgcatacaattatcaaaatgatttggat
gataacactgtaccagaaatacagcgaactaaccttacaaatgtagttttgactttaaaa
agtcttggtattcatgacttgttgcactttgaatttatggatcctccacccgctgaggct
ttattgaaagccctggagcttctatttgctttaagtgctttaaataagcttggggagtta
actaaggtaggaagacggatggcagagttcccacttgatcctatgttgtcaaaaatgata
gtggtttcagaaaaatacaagtgttcagaagacatcatttccattgctgctatgctttct
attggaaactcaatattttaccgtccaaaggataaacaagtgcatgcagacaatgcaagg
ctgaattttcacactggaaatgttggagaccatattgcattgctaaaggtctacaattct
tggaaagagaccaactattcaacacaatggtgttatgaaaattacatccaggttagaagc
atgaaaagggcaagagacatccgtgatcagcttgcaggtcttttagagagggttgaaatc
gagcttactacaaataccaatgatttagatgccataaagaaatctataacatctggattt
ttcccacactctgcaaaattgcaaaaaagtggagcctatcggacacttaaacatgcacag
actgttcacatacatcctagttcggggttggcacagattcttccaagatgggttgtgtac
catgaacttgtactcacaaccaaggaatatatgagacagatcacggagttaaagccagag
tggttgttggagattgcccctcactattaccagcaaaaggatgttgaagacacgagttcc
aagaaaatgcctcgtggagaaggacgtgcaggtgcaacatag
DBGET
integrated database retrieval system
