Trifolium pratense (red clover): 123917492
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Entry
123917492 CDS
T08949
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14 isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123917492
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
123917492
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
123917492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
Helicase_PWI
T2SSE
Motif
Other DBs
NCBI-GeneID:
123917492
NCBI-ProteinID:
XP_045825188
LinkDB
All DBs
Position
LG3:complement(49693867..49719432)
Genome browser
AA seq
2082 aa
AA seq
DB search
MLIQIPRLTNSLREPFDIDQAYLHRKTFLQNQNSRNVASSLDESELARKIVYGWEEAASS
EVRQAYKQFIGAVVGLVDGELRSEEFREVALTVYRLFSRPIEEEDSIDRIIYDKKLELQN
LVGHAIADTKLREVASLAQKLLHLQPHNTNSPVSLERHHDVEDGMEFGDDLVFQAPARFL
VDVSLDDGDIMDFKNTVSLAFQKEEYSHTDPTDHFVVEVEKFNLTWLRDACDKIVRNCNS
QLTRDELAMAICRVLNSEKPGEEIAGDLLDLVGDSAFETVQNLLLHRKEIVDSIHYGISV
FKSDKNASNAQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRNRRGIEHAGDGDLSTLDFS
SLLQASERKNLVDGMVGSGDKSIAVNALPEGTIRKYLKGYEEVIIPPKPTAPMKPGERLI
EIGELDDFAQAAFRGYKSLNRIQSRIFQTVYGTNENILVCAPTGAGKTNIAMISILHEIG
QHFRDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMSVRELTGDMQLSKNELEET
QMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQ
TMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEPNFAARKEL
LNSICYNKVVDSIRQGHQAMVFVHSRKDTAMTAHKLVELARMNEDLELFNNDTNPHYFFM
KKEVIKSRNKDLVQLFEFGMGIHHAGMLRSDRGLTERLFSDGLLKVLVCTATLAWGVNLP
AHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRL
LTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDE
VMADPALSSKQRSLVIDAARSLDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYN
EMLRRHMNDSEVINMVAHSSEFENIAVREEEQNELEMLVRASCPIEVKGGPSNKHGKISI
LIQLYISRGSIDSFSLVSDASYISASLARILRALFEICLRRGWCEMSLFMLDYCKAVDRQ
VWPHQHPLRQFDRDLSAEILRKLEERGADLDHLMEMEEKDIGALIRYAPGGRLVKQYLGY
FPSLQLSATVSPITRTVLKVDLVITPTFIWKDRFHGTAQRWWILVEDSENDHIYHSELLT
LTKRMAKGEPYKLSFTVPIFEPHPPQYYIHAVSDSWLHSEAFYTITFHNLPLPEVCTSHT
ELLDLKPLPVSSLANIDHEALYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAE
LAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWKKRLVSQLGKKMVEMTGDYTPDLMALLS
ANIIISTPEKWDGISRNWHSRSYVTKVGLIILDEIHLLGADRGPILEVIVSRMRYISSQT
ERAVRFIGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNS
MNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAAADEHSRQFLNMPEEALQMVL
SQVSDQNLRHTLQFGIGLHHAGLNDKDRSFVEELFANNKIQVLVCTSTLAWGVNLPAHLV
IIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEP
FPVESSLRERLHDHINAEIVSGTISNKQDAVHYLTWTYLFRRLMVNPAYYGLEIVEPEFL
SSFLSSLVQSTFEDLEDSGCIKMNEDEVEPVMLGSVASQYYLSYMTVSMFGSNISPDTSL
EVFLHVLSAASEFDELPVRHNEEKYNEGLSEKVRYPVDKNHLDDPHVKANLLFQCHFSQL
ELPISDYATDLKSVLDQSIRIIQAMIDVCANSGWLSSSITCMHLLQMVMQGLWFDKDSSL
WMLPCMNTDLITSLSKRGIYSLQELLDIPRAALQTAIGNFPASRLYQDLQHFPHVKMKLK
LQEKEIGGERSHILHIRLEKLNSRRHSSRAFVPRFPKIKEEQWWLVLGNTSTSELYALKR
VSFSDHLVTTMKLPPTAANLQDVKVTLVSDCYIGFEQEHSIK
NT seq
6249 nt
NT seq
+upstream
nt +downstream
nt
atgttgattcagattcctcgccttacaaattctctcagagaacccttcgatatcgaccaa
gcctatcttcatcgcaaaacctttctccaaaatcaaaattctcgcaatgttgcaagctcg
cttgatgaatctgaacttgcacggaagattgtatatggttgggaagaagcagcttcatcg
gaagtgcgacaagcctacaagcagtttataggagcagtagttggcttggttgatggagaa
ttgcgctctgaggagttccgtgaggtggcattgactgtgtaccgtcttttcagcaggcct
attgaagaggaggattctattgatagaattatttatgataaaaagttagaattgcaaaac
cttgtcggtcatgcaattgctgataccaagttgagggaagttgcatcgctagcacaaaaa
ctcttacatttgcagcctcacaatacaaattctcccgtttctttggaaaggcatcatgat
gttgaggatggtatggaatttggagatgatttggtttttcaagccccagctcgtttcttg
gttgatgtatccttagatgatggagacataatggatttcaaaaacacagtttcattagca
tttcagaaagaagagtatagtcatactgacccaacggaccattttgttgtcgaagtagaa
aagttcaatttgacctggttaagagatgcatgcgataaaattgttaggaattgtaattca
cagttaacccgagatgaactggcaatggccatttgtagggttcttaattccgaaaagcct
ggcgaagagatagctggagatttgttggaccttgttggggatagtgcatttgaaactgtg
caaaatcttcttttgcatcggaaggagattgttgattctattcattatggcatatcggta
ttcaagtctgataaaaatgcttcaaatgctcagtctcgcatgcctagttatgggacacag
gtgactgtacaaacagaatcagaaaaacaaattgacaagcttcgacgcaaggaggaaaag
agaaacagacgtggaatagaacatgctggggacggtgacttgtcaacactggatttctca
tctttacttcaagcaagtgagaggaaaaatttggttgatgggatggttggttctggagat
aagtcaatagctgttaatgctcttcctgaaggaactatcagaaagtatcttaaggggtat
gaagaagttattattcctccaaaaccaactgcgccaatgaaacctggagaaaggctgatt
gagattggggagttagatgactttgctcaagctgctttccgtggttacaaatcgcttaac
cgtatccagagcaggatatttcaaactgtttatggaacaaatgagaatatactagtgtgt
gcccccacaggagctggcaaaactaacatagctatgatttcaattcttcatgagattgga
caacacttcagggatggttacttgcacaaagatgaatttaagatagtttatgttgctcca
atgaaggctttggctgcagaagtcacttcaacattcagccaacgtttatctccattgaat
atgagtgtcagagagcttactggagatatgcagctctctaaaaatgaactagaagaaact
cagatgatagtgacaacacctgagaaatgggatgtcataactcgcaagagcagtgacatg
tcactctcgatgctggtgaagctcttaattattgatgaagtgcatctactgaatgatgat
agaggtcctgtaatagaggctttagttgctaggacactgcggcaggtggagtcaacccag
acaatgatacgcattgtgggcctttctgccacactccccaattacctagaggttgctcag
tttctcagagtaaatccagacacagggcttttcttctttgattcaagttatcgtcctgtg
cctcttgcacaacaatatattggaattagtgagccaaactttgcagctcgtaaggaattg
ttgaattctatatgctataacaaggttgttgattctattaggcaaggtcatcaggcgatg
gtatttgttcattcacggaaagacactgcaatgactgctcataaactggttgaacttgca
cgaatgaatgaagacctggaactcttcaataatgatacaaatccacattatttctttatg
aagaaagaagtcattaaatcaagaaacaaagatctcgttcaactttttgaatttggcatg
ggtattcatcatgccgggatgttacgttcagatagaggactgactgagaggcttttctct
gatggacttttgaaggtacttgtctgcacagcaactctggcatggggtgtcaatctacct
gctcacacagttgtaattaagggaacccaaatatatgatccaaaagctggtgggtggcga
gacctgggtatgcttgatgtgatgcagatatttgggcgagctgggagacctcagtttgat
aaaagtggtgaaggtatcataattacgtctcacgacaaactagcatattatttgcgacta
ttgacgagtcaactcccaattgaaagccagtttattagctcgttgaaagataatttgaat
gcagaggttgcattgggcaccgtaactaatgttaaggaagcctgtgcatggttgggatat
acctatcttttcataaggatgaggatgaatcctttggcatatggtattggttgggacgag
gtgatggctgatcctgctttgagttccaagcaaagatctcttgttattgatgctgcacgt
tcacttgataaagcaaaaatgatgaggtttgatgagaaaagtggcaatttttactgtact
gagcttggtcgcattgcaagccacttttacattcaatattccagtgttgaaacatacaat
gaaatgttgagacgtcacatgaatgatagtgaggtgattaacatggttgcacattcatct
gaatttgagaatattgctgttcgagaagaagaacagaatgagctagagatgttggtacgc
gcatcatgtccaatagaagttaagggcggtccttccaacaaacatggaaagatttccatt
ctgattcagttgtacatatctcgaggctctatagattctttttcattggtttctgacgct
tcatacataagtgcaagcttggcccgtatattgcgagctttatttgagatttgtttgcga
agaggctggtgtgagatgtcgttgttcatgttggattattgcaaagctgtagatcgccaa
gtttggccgcaccaacatccccttagacaatttgacagggacctttctgcagaaatattg
cggaagcttgaagagcgaggagctgacttagatcacttgatggagatggaggaaaaagac
attggggcattaattcgttatgcacctggaggaaggttggtcaagcaatacctagggtat
tttccttcacttcagttatcagcaactgtgagtccaataaccagaactgtcttgaaggtt
gatcttgtcataacacctacttttatttggaaagatcgttttcatggtactgctcaacgc
tggtggattttggtagaggactctgagaatgatcatatttaccactcagaacttcttacg
ctgacaaaacggatggctaagggagaaccttacaagctttccttcaccgtgcctatattt
gaaccacatccgccacaatattacattcatgccgtttctgattcatggcttcattcagaa
gcgttctacactattacctttcataatttaccattgccagaggtctgtacttctcacacg
gaactacttgatttaaaacctcttcccgtgtcttctcttgcaaacattgatcatgaagca
ttatataaattttcacattttaaccccatacaaacacagacttttcatgtcttgtatcac
acggacaataatgttctattaggagctccaactggcagtggaaaaactatatctgctgag
cttgctatgctccggcttttcaacactcagcctgatatgaaggttatttatatagcacct
ttgaaggctattgttagggaaagaatgagtgactggaaaaagcgtcttgtgtctcagcta
gggaaaaaaatggttgaaatgactggagactatactcctgatttgatggcactcttgtcg
gccaatatcatcatatctactcctgaaaagtgggatggtataagtcgtaattggcatagt
cgtagctatgtcacaaaggttggacttatcatattggacgagattcacttgttgggagct
gatcgtgggcccatccttgaggttattgtttctaggatgagatatatatcatcacaaaca
gagcgtgcagtacggtttataggtctttctacagctctggcgaatgctggtgatctagct
gactggttaggcgtggaggagattggactcttcaatttcaagccaagtgtgaggcctgta
cctttggaagttcatatccagggatatcctggaaagtattactgcccacggatgaacagt
atgaataaaccagcatatgctgccatatgcacacattcacctgccaaaccagttcttata
tttgtctcatcacggcgccagacaagacttactgcactagatctaattcagtttgctgct
gcagatgaacattcaaggcaatttcttaatatgcccgaagaagcactgcagatggttctg
tctcaagtctctgaccaaaacttgaggcatactttacaatttggtatcggtttacatcat
gcaggcctgaatgacaaagacagatcttttgttgaggaactttttgcaaataacaagatt
caggtattggtttgtaccagtacactggcttggggtgtgaatcttccagctcatctagtc
atcatcaaggggacagaatactatgatggaaaagctaagaggtacgttgattttccaatc
accgatatcttgcaaatgatgggtcgtgctggacgaccccaatttgatcaacatgggaag
gcagtgatacttgttcatgaacctaagaagagcttctacaaaaagttcttgtatgaaccc
tttccggtagagagtagtttgagggagcggctgcatgatcacataaatgccgaaattgtt
tctggaacaatcagcaataaacaagatgcagtgcattaccttacatggacttacttattc
cgtagactgatggtcaatcctgcttactatggattggagattgtagaacctgaatttcta
agttcgtttttgtctagcctagtacaaagcacatttgaggatttggaagatagtggatgc
ataaagatgaatgaagatgaggtagagccagtaatgttggggtcggtagcatctcagtat
tacctcagctacatgactgtgtcaatgtttggttcaaacatcagtccagatacatcactt
gaagtctttctgcatgtcttatctgctgcttccgaatttgatgaacttcctgtgcgtcac
aatgaggaaaaatacaacgaaggactgtctgagaaagttagatatcctgtggataagaac
catttggacgaccctcatgtcaaagcaaatcttctatttcagtgtcatttttcccaattg
gagttaccaattagtgattatgccacagacttgaaatcagtattagatcagagtatccgc
ataatccaggccatgattgatgtatgtgcaaatagtggttggctttcgagctctataact
tgcatgcatcttctgcaaatggtaatgcagggtctgtggtttgacaaggactcttcattg
tggatgctcccgtgcatgaatactgatcttataacttcactaagcaaaagaggaatttac
agtttacaagaattgctagatattcccagggcagcattgcagactgcgattggaaatttc
ccagcttcaagattgtaccaggatctacagcacttccctcatgttaaaatgaaattaaag
cttcaggagaaggaaattggtggtgagaggtcccacatattacacatcagattagaaaag
ctgaactctagacgacactcatctagagcatttgttcctcgatttccaaagataaaagag
gagcaatggtggttggttcttggtaatacctctacgtctgagctatatgctctgaaaaga
gtttcgttttcggatcacttagttacaacaatgaagttgcctccaactgcagcaaatctt
caggatgtaaaagtgactctagtctccgactgttacattggatttgaacaagagcattcc
attaaataa
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integrated database retrieval system
