Trifolium pratense (red clover): 123917808
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Entry
123917808 CDS
T08949
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03440
Homologous recombination
tpra03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123917808
03460 Fanconi anemia pathway
123917808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123917808
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123917808
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
123917808
FA (Fanconi anemia) pathway
Downstream FA components
123917808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Pex19
Yippee-Mis18
HBB
Motif
Other DBs
NCBI-GeneID:
123917808
NCBI-ProteinID:
XP_045825613
LinkDB
All DBs
Position
LG1:43376576..43396601
Genome browser
AA seq
1227 aa
AA seq
DB search
MFSSTAKNPNPKNVYHIGGLAVEFPYQPYGSQFAFMGRVISTLNRAQKEGHCHALLESPT
GTGKSLSLLCSTLAWQQHYKPAPDPTADPLANGGGFLPDEVSLSSASENPESEVTNKKQK
KKAVPTIYYASRTHSQISQLVRELRKTSYRVPMALLASRKHYCTNKNICGKENIDEECKL
LLKDKELGCSEFKNVHKVKSHPSLQKGGCNEVHDIEDLVKVGQSVRGCSYYAARSMSDDA
QLVFCPYNYIINPVIRGAMDVDIKGAIVIFDEAHNIEDISRDAGSVDIEEDILDKLQMEL
QQLLHSDTAIYQPLYEMTQGLTSWMEQKKTKLEKRDFQHYVSCWTGDKALQELEEANISK
QCFPILLECATKAIKVATDLETDAPRLSGMSVITLEGLFLSLSYFFSKNGSHMLDYQLAL
QRSVRKHERRAFGNWTHTLSLWCLNPEVVFRDVADLSLSVILTSGTLSPMTSFSSELGVK
FEASLEAPHVIDIDSQVLPAIIPTGPGNIPLNASYKTADGYAFQDAVGRSLEEIFKIVSG
GCLVFFPSYKLMEKLCTRWSETGQWSRLNAEKSLFVEPKGSSQDDFELTLKGYYDSIHHD
KRPASGRKRRIKKTDLNHFHAVDSLQDSKKGGAALLGVCRGKVSEGIDFSDDNARVVIIV
GIPFPNINDIQVALKKKYNDTFKSSKHLLGGNEWYCHQAFRALNQAAGRCIRHRLDYGAI
ILLDERFCEERNRAFISKWLRRPLRVYDNFDVSLEGLKSFFENAKERYGVNTVHPTTNLD
LNGDDGVQNKDGIMKFTKKKNQKLNKSRNGGDKETSVIEDNISIPISSSHSLAESRPPAQ
RNSNAYNFKDHINLECCNLTERFPGESSVPFTHDETSIVKESPCLDIGSDAGSSDYSKND
NSDSTIIEASARFAMDRLSSFPVSSTTGSKVSMTVTPEKSVTANNIPETESSLNLSVNSH
NQKRRKSMVIPFVNLIEEENNDASCASTPTWCTKSSLEVREATHRTECSYGKILNSQSPQ
LPTNNIPGSCSVPLLDKRLQLFCSLCKNPLGRHENHLYLTCSLISSSKVHLRFLLKKRLE
TYTADTEKSVQVIVTDFSFVDQRICSRIPKSTQEQGIWCPEDGCVFSTIFCPFCSNTNNL
LGVQIMATNSSNVQLLDKILFFVDSLEMKNQEETGKSASEEMGFLPIIDSGMGGVAALNS
LEKYSYVPQPGKSEVRRSKKSKPRLRG
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgttttcctccaccgcaaaaaaccctaaccctaaaaatgtgtaccacatcggaggtctg
gcggtcgaatttccttaccaaccgtacgggtcgcaatttgcgtttatgggtcgagtaatc
tcaacccttaaccgagctcagaaagaaggccactgtcacgcgttgctcgagtctccaact
ggtaccggcaaatccctttcgcttctttgttccacactcgcttggcagcaacattacaaa
cctgctccggacccaactgccgatcctctcgccaatggtggaggttttcttcccgacgag
gtttcgctttcttccgcatcagaaaatccagaatcagaagtcaccaataagaagcagaag
aaaaaggcagttccaactatttattatgcctcgagaacgcactcacaaatttctcaattg
gttcgtgaattgcggaaaacatcatacagggtgccgatggctctgttggcatcacgaaaa
cattactgcaccaataaaaatatatgtggcaaagaaaacattgacgaagaatgtaaacta
cttttgaaagataaggaattaggctgttcagaattcaaaaatgtgcataaagtcaaaagt
cacccatcccttcagaaaggaggatgcaatgaggtgcacgacatagaagatcttgtaaaa
gttggacaatcggtgagaggttgctcttattatgctgcccgttctatgtcagatgatgca
cagttggtattttgtccatataactacatcattaatccagtcatccggggagcaatggac
gtggatattaaaggagccatcgtgatatttgatgaagctcacaatatagaggacattagt
cgtgatgctggtagtgtggatattgaagaggatatattggacaaactacaaatggagctc
cagcaactccttcattcagatactgcaatttaccaacccctttatgaaatgacacagggc
cttactagttggatggaacagaagaaaactaaactagaaaaacgtgactttcagcactat
gtgtcatgctggacaggtgataaggctttacaagagcttgaagaagcaaatatttcaaag
cagtgcttccctatattgctagaatgtgccactaaggcaatcaaagttgccacagacttg
gaaacggatgcaccgcgtttaagtggcatgtcagtgataacattggaaggcttattctta
tcactatcttatttcttctctaaaaatggatctcacatgttggattaccagcttgctctt
cagcgaagtgttagaaaacatgagagaagagcttttggaaactggacacatactttaagt
ctgtggtgcttgaatccagaagttgtatttagagatgttgccgatctttctttatcagtc
atattgacttctgggacactgtcaccgatgacatcattttcttctgaacttggagttaag
tttgaagctagtcttgaagctccacatgtaattgatattgattcacaggtgttgcctgct
ataatccccaccggtcctggtaatattcctctgaatgcaagttacaaaactgctgatgga
tacgcattccaggatgcagttggaagatctttagaggaaatcttcaagattgtttcaggt
ggatgtcttgtgttctttccaagttataaattgatggaaaaattatgcacccgatggtct
gaaacaggtcaatggtctcggctcaatgcagaaaagtcactttttgttgaaccaaagggg
agtagccaagatgattttgaacttacattgaagggttattatgactcaattcatcatgac
aaaagacctgcttctggaaggaaaagaaggattaagaaaactgatctaaatcacttccat
gcagttgattccctacaggattctaagaaaggaggagcagctttacttggtgtttgtcga
ggaaaggtttctgaaggaattgatttctctgatgataatgctagagtagtcattattgtt
ggtatcccatttccaaacataaatgatattcaagttgcattaaagaaaaagtataatgac
acattcaagtcatctaaacatctcttaggaggaaatgagtggtactgccaccaagcattt
cgagctttaaatcaagctgcagggcggtgtatacggcatagacttgattatggagcaatc
atcctattggatgagcgcttttgtgaagaaaggaatagagcatttatttcaaagtggtta
agaagacccttgagagtgtatgacaattttgatgtgtcactggagggactaaaatcattc
tttgagaatgcgaaggagaggtatggcgtgaatacagtccaccccacaacgaatttggac
ttaaatggtgatgatggtgttcaaaacaaggatggaattatgaagtttacaaagaagaaa
aatcagaaactgaacaagtctagaaatggaggtgataaagaaacatcagttattgaggat
aacatctctattcccatatcaagctctcacagtcttgctgaaagtcggccaccagctcaa
aggaatagtaatgcatacaatttcaaagaccatattaacctagaatgctgtaatctgaca
gaaaggtttcctggggaatcatctgtgccatttacgcatgatgaaacctccattgtcaag
gaaagcccatgtttagatattggcagtgatgctggcagctccgattactctaagaatgac
aattctgattccaccataattgaggcttctgctcgatttgcaatggatcgcttgtcaagt
tttccagtgtcttcaactactggaagtaaagtatcaatgacggtcactcctgaaaagagt
gtaactgcaaataatattccagaaacagaatcatctttgaatttgagtgttaattctcac
aatcagaaaagaagaaagtccatggtcataccatttgtaaacctcattgaagaagaaaac
aatgatgcatcttgtgctagcactcctacatggtgcacaaaaagctcattggaagttaga
gaggcaactcatagaactgaatgtagttatgggaaaattttaaactcgcaatctcctcag
ttaccaacaaacaatatacctggttcatgttctgtccctctactagacaaaaggttacaa
ctattttgttcactctgcaaaaacccattgggacgacatgagaaccatctatatcttaca
tgctctttgatttcatcatcaaaagttcacttgagattccttttgaaaaagagactggaa
acttacactgcggatacagaaaagagtgtacaagttattgttactgatttttcatttgtt
gatcaacgtatttgcagtagaatacccaaaagtacacaggaacagggtatatggtgtcca
gaagatgggtgtgtattcagcacaattttttgtcccttctgcagtaataccaacaatttg
cttggagttcagatcatggcaaccaattcatcaaatgttcagttacttgacaagatattg
tttttcgttgattctttggaaatgaaaaaccaggaggaaacaggaaaaagtgcctcagag
gaaatgggttttttgccgattatcgactctggcatgggtggagttgctgccttaaattcc
cttgagaaatattcttatgttccccaaccagggaaatcagaagtccggaggtctaaaaaa
tcaaagccaagactaagaggctaa
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integrated database retrieval system
