Trifolium pratense (red clover): 123917840
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Entry
123917840 CDS
T08949
Name
(RefSeq) uncharacterized protein LOC123917840 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123917840
Spliceosome [BR:
tpra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
123917840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_12
NELF-A_N
Motif
Other DBs
NCBI-GeneID:
123917840
NCBI-ProteinID:
XP_045825653
LinkDB
All DBs
Position
LG3:complement(10088096..10097319)
Genome browser
AA seq
1206 aa
AA seq
DB search
MVSHCPTKSPAGASNDNLELEEVISKGSLDFDEWVSLISDIEKIYPDNVEKICLVYNHFL
SEFPLCHGYWRKYAAHVTRLCTLEKVVEVFERAVSAATYSVGMWVDYCSFGMSAFEDASD
IRRLFKRAISFVGKDYLCHTLWDKYIHFEFSQQQWISLAHIYIQTLKFPTKKLHPYYDSF
RKLLTSLEEGMTSLDNSPKESQSEPFDGEIPMTTCCNDDKTYCIIKDMVDSSAGLTSSIA
LKKYRIIGEQLYHNACELYSKISPFEANIQRYYFDVRPLDSNQLQNWHDYLDFIELQGDF
DWAVKLYERCLIVCANYPDYWTRYADFMEAKGGREIANYSLDRATKVYLKSVPAMHLFNA
RFKEQIGDVLAARAAYIRRCNETDSDFVENVISKANMEKRLGNTDLAFSIYQEAIEIAAA
EEKLHALPILYIHFSRLKYMSTNDVDAARVVLIDGIKTLPQNKLLLEELIKFSMMHGGQK
HIDVMDSMIAGALSPRSDGSEGLSSEDAEDISNLYLEFVDYCGTIHDVRRALNRHIRLFP
GSARIDLHQQSTKSRRALNLIKDKREEVSVAMPNQAPRDPSSNLENHIVRSNDTDTACLQ
IVESDDKAEDNARELHLSVSDEPRDSDPERNLSPSDLVGVKEESTKVNNFKKDCSESGIS
SENLLHQTASANQPSQTVQASSNENSVFPQGKCELETEELKPLSETSAPLNIRESTCPDS
GLVASQVECETIQESCKSNSREVVGGYTTNRYNSSRSAQDSDYAQVHVERNRPYSSSQVE
CETIQESCKSNSREVVGGYTTNRYNSSRSAQDSDYAQVHVERNRAYSSSHRDHRMKRPLP
PRYSRNSGGKWGPMKNDGKYRGGPKYGNRGGPKYGDRGNTHRREHQHQHLSPKQIHPADG
GAQFPITPGCSQSALQVQQCDQRQDQFQVTTSTADFVAPQSWPIQNIQIQNSLSQSQLPA
STTPNVLQYANAMQGNEQYGYMQNGQDYNQMWQNYYYQQQLQLQQLYIQLQQQPFQPESS
QQQSQPEPLQPQQLQPLQLQQQDLQQQQQYFQQQQPQQQEHSVYLHPAQPSTQSNNNPLE
DQAHAIVISQQQQLQLQQHYIQLQQQSFQPELSQQVPQHSQPELLQPQQLQQLQLQQVLP
QQQEHPVYLQQVQPPTQSRSNSVEDQAQAIVTPQGQEAISSQQSGDPGLISSPALHHPQE
KPTQEE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggtctcgcactgtcccacaaaatcacccgccggcgctagcaatgacaatcttgaactt
gaagaagttatttctaagggatcactagactttgatgaatgggtttcactgatttcagat
attgagaaaatatatcctgataatgtggagaaaatatgtctagtttacaaccatttcttg
tccgaattccctttgtgtcacgggtattggaggaagtatgctgcacacgtgacacggtta
tgcaccttggaaaaggttgttgaagtgtttgaacgagccgtgtcagctgcaacatattcg
gttggcatgtgggttgattattgtagctttggtatgtctgcttttgaggatgcatctgat
attcggagattgttcaagagagccatttcctttgttgggaaggactacttatgtcatacc
ttgtgggacaagtatattcattttgagttttcccagcagcagtggatttcacttgctcac
atttatatccagactcttaagtttccaacaaaaaagttacacccgtattatgatagtttt
agaaagttgctaacctctttggaagagggcatgacaagcctggacaattctccaaaggaa
tcacaatctgaaccatttgatggtgaaattcccatgactacatgttgcaatgatgacaag
acttattgtattatcaaagatatggtggattcgtccgctggattgaccagttcaatagca
ctaaaaaagtacaggatcattggagaacagctttatcataatgcttgtgagttgtattcg
aagattagtccttttgaggcaaatattcagagatattactttgatgtccggccacttgat
tcaaatcaattgcagaattggcatgattatctggattttattgaacttcaaggggatttt
gactgggctgtgaaactttatgagagatgcttgattgtgtgcgccaattatccggattac
tggacgcgttatgcggatttcatggaagccaagggaggaagagaaatagcaaattattct
ctagaccgagcaaccaaagtttatttgaagagtgtgccagcaatgcatttatttaatgct
aggtttaaggaacaaataggagatgttttagcagctcgtgctgcatatatccgtcgttgt
aatgagacagattcagactttgtggagaatgttatatcaaaagctaatatggaaaaacgt
ttgggaaatacggatttagctttcagtatataccaagaagcaattgaaatagctgcagca
gaggaaaagctacacgccctacccattttatatattcatttctctcggctaaaatatatg
agtacaaacgatgtggatgctgccagagttgtcttaattgatggtatcaaaactttgcct
caaaacaaattgcttctggaggaattgataaagttctctatgatgcatggagggcaaaaa
cacattgatgtaatggattcaatgattgctggtgcattatctccaaggtctgatggatct
gaaggtctgagttcagaagatgcagaggatatatcaaacttatacctagagtttgttgac
tattgtggaaccatacatgatgtgaggagggcattgaatcgacatataagattatttcca
ggctctgcgcggatagatttacatcagcaatcaactaaaagtagaagagcactgaatttg
atcaaggacaagagagaagaggtttctgtcgccatgcctaatcaagcacctagagatcct
agttctaacttggaaaatcatattgttcggtctaatgatacagatacggcctgtcttcaa
attgtggaatctgatgacaaagcagaagataatgcaagggaattacatctctcagtttca
gatgagccaagagacagtgaccctgaaaggaatttgtcgccgtcagatttagttggagtt
aaagaggaatctaccaaagttaataattttaaaaaagattgttctgaatctggcatttca
tcagaaaatttgttacatcaaactgccagtgcaaatcaaccatcacaaactgtgcaagca
tcctcaaatgagaactctgtttttcctcaggggaagtgtgagcttgagactgaagaattg
aagccactttctgagacaagtgcgccactgaacatccgggaaagcacgtgccctgattcg
ggactagtggcatctcaggtggagtgtgagacaattcaggaaagctgcaagtcaaatagt
agagaagtagtgggtggttataccacaaatcggtacaactcttcaagaagcgctcaagat
tccgattatgctcaagttcacgttgagagaaacaggccgtattcatcatctcaggtggag
tgtgagacaattcaagaaagctgcaagtcaaatagtagagaagtagtgggtggttatacc
acaaatcggtacaactcttcaagaagcgctcaagattctgattatgctcaagttcacgtt
gagagaaacagggcgtattcatcatctcatcgagaccatagaatgaaacgaccactacca
ccccggtattctagaaatagtggtggaaaatggggtccaatgaaaaatgatggtaaatat
cgtggagggcccaaatatggcaatcgcgggggtcccaaatatggtgatcgtgggaataca
catagaagagagcaccagcaccaacatttatctccaaaacaaattcatccagctgatggg
ggagcacaatttcccataactcctgggtgttctcaatctgcattgcaagtacagcaatgc
gatcaacgtcaagaccaatttcaagtcactacttcgactgctgattttgtggcacctcaa
agttggcctatacaaaacattcagatacaaaactctttgtctcagtcccaattaccagct
agtaccacaccaaacgtattacaatatgcaaatgcaatgcaaggcaatgagcaatatgga
tatatgcagaatggccaagactataatcagatgtggcaaaactattactaccagcagcag
ttgcaactacaacagctttatattcaattgcaacaacaaccatttcaaccggaatcgtca
caacaacaaagtcagccagaacctcttcaaccacaacagttgcaaccattgcaattacaa
cagcaggatctgcagcagcagcagcaatactttcaacagcagcaaccacagcagcaagag
cattctgtgtaccttcatccggcacagccgtcgacacagagcaacaataatcccctagaa
gaccaagcacatgcaatagtgatatcgcagcagcagcagttgcaactacaacagcattat
attcaattgcagcaacaatcattccaaccggagttgtcacaacaagttccacaacatagt
cagccagaacttcttcaaccacaacagctgcaacaattgcaattacaacaggttctgccg
cagcagcaagagcatcctgtttaccttcagcaggtacagccgccaacacagagcagaagc
aattctgtagaagaccaagcacaggcaatagtgacaccgcagggccaagaagcaatatca
tcacaacaatcaggcgaccctgggttgatttcttctcctgctctgcaccatccccaagag
aaacctacccaagaagagtga
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