Trifolium pratense (red clover): 123917972
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Entry
123917972 CDS
T08949
Name
(RefSeq) probable alpha-mannosidase At5g13980 isoform X1
KO
K01191
alpha-mannosidase [EC:
3.2.1.24
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00511
Other glycan degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
123917972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123917972
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.24 alpha-mannosidase
123917972
Membrane trafficking [BR:
tpra04131
]
Autophagy
Cytoplasm to vacuolar targeting (CVT) pathway
Selective cargos
123917972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_38N
Glyco_hydro_38C
Alpha-mann_mid
Laman-like_dom
Glyco_hydro38C2
SMIM43
VKOR
Motif
Other DBs
NCBI-GeneID:
123917972
NCBI-ProteinID:
XP_045825845
LinkDB
All DBs
Position
LG3:36037012..36044269
Genome browser
AA seq
1046 aa
AA seq
DB search
MDSGGSLIFPLFLLFLFWCIISSESQFISYNTTSTIVPGKLNVHLVAHTHDDVGWLKTVD
QYYVGSNNSIQGACVQNVLDSLIPALLADKNRKFIYVEQAFFQRWWRAQSEVVQKTVKQL
VNSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHRFIKDEFGITPRIGWQIDPFGHSAVQ
AYLMGAEVGFDSLFFARIDYQDRAKRKDEKSLEVVWQGSKTFGSSAQIFSDAFPVNYEPP
SNFYYEVDSDSPLVQDDINLFDYNVPQRVNEFVAAAISQANITRTNHIMWTMGTDFQYQY
AHTWFRQLDKFINYVNQDGRVNALYSTPSIYTDAKHAANEAWPIKTDDYFPYADRVNGYW
TGYFTSRPALKGYVRLLSGYYLAARQLEYFKGKSALGPNTESLADALAIAQHHDAVSGTS
KQHVANDYAKRLSIGYTKAEKAVSASLAFLTEAATKTGHRTPQIQFQQCPLLNISYCPAS
EVDFSDGKNLVVVIYNPLGWKREDVIRIPVANENVVVRDSSGKEIQSQLLPIPDSFLGLR
NYHAAAYLGVSPNVNPKYWLAFSAIVPPLGFSTYYVSKDKQAATISDRHIGYRSGSPNDT
FEVGLGNLKLIYSGKEGKLTQYINRKRKVKESLEQTYKYYASYGNDFTANAQASGAYIFR
PNGSSIQINPNGTVKSYVNCELLVFNYLTNIQCNKRLMSFHFQKIQSPLTVLRGPVVHEV
HQQINSWIYQTTRLFKGKEHAEVEFIVGPIPIDNGIGKEIATEIKTNLTSSKTFYTDSNG
RDFIERVRDYRKDWNLEVNQPVAGNYYPINLGIYLKDNNREFSVLVDRSVGGSSILDGQL
ELMVHRRILNDDSRGVAEALNETVCVSNKCTGLTVLGKYYFRIDPVGEGARWRRTFGQEI
YSPFLLAFTECEGNWGDSHVTTFSGIDSSYSLPENVAIITLQDLGDGKILLRLAHLYEIG
EDAHLSVKSSLELKKVFHNKQINKVTEVSLSANQERAEMEKKRLVWQVKGSSREPQVSRG
GPVDPEKLIVELAPMEIRTFIININQ
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggatagtggtggttctctcatatttccattgtttttactcttcttgttttggtgtatc
atttcatctgaatcacaattcataagctacaatactacctcaaccattgttcctgggaag
cttaatgttcatttggtcgctcatactcatgatgatgttggatggttgaaaaccgttgat
cagtactatgttggttccaacaactccattcagggagcatgtgttcaaaatgtgcttgat
tctcttataccggctttgttagcagacaagaaccgtaaattcatctatgttgaacaggca
ttcttccagcgttggtggagagcacagagtgaagttgttcagaaaacagtcaagcagctg
gtcaactctggtcaattggaattcataaatggaggtatgtgtatgcatgatgaggctgct
acacattacattgacatgattgatcagacaacccttggacatcgattcatcaaagacgaa
ttcggcataacaccaagaataggatggcaaattgatccatttggacattctgcagtgcag
gcctacttgatgggagcagaggttggatttgactctttattctttgcacggatcgactac
caagaccgagctaagagaaaagatgaaaaaagtcttgaagttgtgtggcagggctctaag
acctttggttcatctgcacagatattttctgatgcgttccctgtgaattatgaacctccc
agtaatttctactatgaagtagatagtgattctccgcttgttcaggacgatatcaatttg
tttgactacaatgtccctcaaagagtaaatgagtttgtcgcagctgcaatatcacaggcc
aatataacgcgcacaaatcatataatgtggacaatggggacagatttccagtaccaatat
gcacatacctggtttaggcaactggacaagtttattaactatgttaaccaggatggacga
gttaatgccttatactcaacaccgtcaatatatactgatgcaaaacatgctgcaaatgaa
gcttggccaatcaagacggatgactattttccgtatgctgatcgtgtaaatggctactgg
acggggtattttacaagtaggccagcactcaaaggttatgttagattgttgagtggttac
tacttggcagcaaggcagttggagtatttcaaagggaagagtgccttaggtcctaatact
gaatctttggctgatgctttggctattgctcaacaccacgatgcggtatctggtacatca
aagcagcatgtggctaatgattatgcaaaacggctttcaataggttatacaaaggctgag
aaagctgtttcagcatcacttgctttcttgacagaggcagcaaccaaaaccggtcatagg
actcctcagattcaatttcaacagtgtccacttcttaacataagttactgtcctgcatca
gaagttgacttctcagatgggaaaaatctggttgtcgtcatttacaatcctcttggatgg
aaaagagaggatgttataaggatccctgttgccaatgaaaatgtcgttgttcgggattct
agtgggaaagaaatccaatcacagctgctgccaatacctgattcttttcttggtttaaga
aactaccatgctgcagcatacctaggagtatctccaaatgtaaaccctaaatattggctt
gctttttcagctattgttcctccacttggttttagcacttactatgtgtcaaaagataaa
caagcagctactatttcagatagacatataggatatagatcagggagtccgaacgatacg
tttgaagtaggcctaggaaacttgaaacttatttactctgggaaggaagggaaacttact
caatatatcaacagaaaaaggaaggtcaaagaatctctagagcagacatacaagtattat
gcctcatatgggaatgactttacagcaaatgctcaggcgtcaggagcatatatttttcgc
cctaatggttcatcaattcaaatcaaccccaacgggacggtaaaatcatacgtgaattgt
gaactacttgtgttcaattaccttaccaatattcagtgtaacaagagattaatgagtttt
cattttcaaaaaattcagtctcctctcacagttttgcgtggaccagtcgtgcatgaagtg
catcagcagatcaattcatggatataccagaccacaagactgttcaaaggaaaagagcat
gctgaagttgagtttattgttggacctataccgattgacaatggaattggcaaagaaatt
gcaaccgagattaaaacaaatctaacaagcagcaaaaccttctatactgattctaatgga
cgtgatttcattgaacgtgttcgagactatagaaaagactggaacttggaagtgaatcaa
cctgttgccggaaattactaccctatcaatcttggtatttacctaaaagataacaacaga
gagttttctgtattggtagataggtctgtgggaggttccagcatcttagatgggcaatta
gagctaatggttcataggaggatacttaatgatgattccagaggtgttgccgaggcacta
aacgaaacagtttgcgtctctaataagtgcacaggcttaacagttttagggaagtactat
ttcagaattgatcctgtaggagagggagctagatggcgtcgaacatttggtcaagagata
tactctccatttcttttagccttcacagagtgtgaaggtaactggggagattctcatgtc
acaacgttctcaggaatagattcctcgtacagcttaccagaaaatgttgcaataataacc
ctccaggatcttggcgatggaaaaattctccttcggctggcgcacttatatgagattggc
gaggacgcgcatctctcagtaaagtcaagtttagagcttaaaaaggtgttccacaataaa
cagataaacaaagtaaccgaggtaagcttatcagctaaccaagaaagagcagaaatggag
aagaagagattagtgtggcaagttaaagggtcatctcgagaaccgcaggtgtcgagggga
ggaccagttgatccagaaaagctaattgtagaacttgctcccatggaaataaggactttt
attatcaatattaaccaataa
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