Trifolium pratense (red clover): 123918234
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Entry
123918234 CDS
T08949
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC2A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123918234
04121 Ubiquitin system [BR:
tpra04121
]
123918234
Enzymes [BR:
tpra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123918234
Membrane trafficking [BR:
tpra04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
123918234
Ubiquitin system [BR:
tpra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123918234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
Prok-RING_1
zf-C3HC4_3
zf-RING_5
Zn_ribbon_RPAB4
Rad50_zn_hook
zf-HC5HC2H_2
DUF7129
Motif
Other DBs
NCBI-GeneID:
123918234
NCBI-ProteinID:
XP_045826187
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All DBs
Position
LG3:1127072..1128908
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AA seq
397 aa
AA seq
DB search
MSTDTTTTTSYWCYRCSRFVRLATQETVICPECDGGFLEQIDQPSRSLQIDARRRRFPAA
AMYMIGQRPSSDHTFRPSSIRRNRRNGGERSPFNPVIVLRGGGTTTTEVTEAGAGGESRG
FELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGISRFEHPPASKAAVDSL
PTIEIDNTHLEMEPHCAVCMEAFEFGTVVREMPCKHIYHPDCILPWLALHNSCPVCRHEL
PSDADGVANNQPQLQSQSQVQSVGLNEEESNIGLTIWRLPGGGFAVGRFSGGRRGAEREL
PVVYTEMDGGFNNGGEPRRISWSSRGGRGRERSGGLRRFFGSFFGCFNNGGVGNQLTVSS
REARSMRTNSSHSSNMDPSPRSRRTWSMDVNSGMRSW
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtctacggatacaacaacaacgacgtcgtattggtgttatagatgcagtcgttttgta
agattagcgacacaagaaacggttatttgtcccgaatgcgacggtggttttctcgaacaa
atcgatcaaccgtcgcgttctcttcaaattgatgctcgtcggagacgttttccggctgca
gctatgtacatgatcggtcaacgtcctagttccgatcatactttccgaccatcttctatc
agaagaaatcgtcgtaacggtggtgaacggtctcctttcaatccggttattgttctccgc
ggcggtggaacaacaacgacagaggtaacagaagctggagctggtggagagagtcgtgga
tttgagcttttttatgatgatggtgctggttctggtttaagacctttacctccaagtatg
tcagagtttcttcttggatctggatttgatagattgttagaacagctttctcagattgag
attaatggaatatcgagattcgaacatcctccggcttctaaagctgcagttgattcatta
ccaactattgaaattgataatactcatttggaaatggaaccacactgtgctgtttgtatg
gaggcttttgaatttggtactgttgttagagaaatgccttgtaagcatatttatcatcct
gattgtattttaccttggcttgcacttcataattcgtgcccggtttgtcgccatgaatta
ccgtctgatgctgatggtgtagctaataatcaaccacaattacagtcgcagtcacaggtg
caatcggttggtttaaatgaagaagagagtaatattgggttgactatttggagattacca
ggtggtggttttgccgtggggagattttcgggtgggagaagaggtgctgagagggagctt
cctgttgtttatactgaaatggatggagggtttaataatggtggtgaacctaggaggatt
tcttggtcttctagagggggtagagggagggagagaagtggcggtttgagaaggtttttc
gggagtttctttggttgttttaataatggtggggttgggaatcagcttactgtttcgagt
agagaggcgagatcaatgaggactaattcgtctcattcttcaaatatggatccctctccg
cgttcgcgaaggacttggtctatggatgttaacagtggaatgagatcatggtaa
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