KEGG   Trifolium pratense (red clover): 123918297
Entry
123918297         CDS       T08949                                 
Name
(RefSeq) THO complex subunit 4D
  KO
K12881  THO complex subunit 4
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03013  Nucleocytoplasmic transport
tpra03015  mRNA surveillance pathway
tpra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123918297
  09122 Translation
   03013 Nucleocytoplasmic transport
    123918297
   03015 mRNA surveillance pathway
    123918297
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123918297
   03041 Spliceosome [BR:tpra03041]
    123918297
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     123918297
    TREX complex
     123918297
Spliceosome [BR:tpra03041]
 Complex C
  Other components
   EJC/TREX
    123918297
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    123918297
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 UBR7_C
Other DBs
NCBI-GeneID: 123918297
NCBI-ProteinID: XP_045826263
LinkDB
Position
LG3:2045018..2049697
AA seq 292 aa
MASSLDISLDDRIKNNKSIRGRGGGRGRGKALSGRGSGTVGGGRRTGAVNGRRVTGNGGR
TTGAVRRGPLMVNTRPSSYAIAKSIRRTKAFPWQSDLFEDSLRAAGIQGVELDTKLYVSN
LDRGVTNEDIRELFSELGELKRYAVHYDKNGNPTGSAEVVYNRRSDAFAALKRYNNVLLD
GKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMTPRGGRGGGAAVLNRGAGWGRRGG
SRGGSGNVRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS
NT seq 879 nt   +upstreamnt  +downstreamnt
atggcttcttcattggatatttcacttgatgatagaattaagaacaacaagagtatccga
ggcagaggaggaggtagaggacgtggcaaagccctttctggccgtggaagtgggactgta
ggtggtggaagaaggactggtgctgttaatgggagaagagtgactggtaatggtggaaga
acaactggtgctgttcgtagaggcccacttatggtcaacactcgcccatcatcttatgct
attgccaagtctattcgcagaaccaaggcttttccatggcagagcgatttgtttgaggat
agccttagagctgcaggaatacaaggagtagaacttgacacaaagttgtatgtttcaaac
ttagaccgaggagttaccaatgaagacatacgggaacttttctccgagcttggggagttg
aagcgctatgctgttcattatgataagaatggaaacccaaccggttcggctgaagttgtc
tataatagaagaagtgatgcatttgctgctctcaaacggtataacaatgtgcttttggat
ggaaagcccatgaagattgagattgttggaacaaattctgaattgcctgtaactgcacgg
gttaatgtctctgcgatgaatggacagagaaagaggacagttgtaatgacgcctagaggc
ggaagaggtggaggtgctgctgtgctaaatcgtggtgctggctggggacgccgtggtggc
tcaaggggtggtagtggtaacgtgcgtggcagaggccgaggccgccctggcaggggtgga
ggtcgtggtcgtggaagaaaggatggagttgagaagtcagctgagcaacttgacaaggaa
ctagagacctatcatgcagaggctatgaacatctcatga

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