Trifolium pratense (red clover): 123918297
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Entry
123918297 CDS
T08949
Name
(RefSeq) THO complex subunit 4D
KO
K12881
THO complex subunit 4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123918297
09122 Translation
03013 Nucleocytoplasmic transport
123918297
03015 mRNA surveillance pathway
123918297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123918297
03041 Spliceosome [BR:
tpra03041
]
123918297
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123918297
TREX complex
123918297
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123918297
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123918297
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
UBR7_C
Motif
Other DBs
NCBI-GeneID:
123918297
NCBI-ProteinID:
XP_045826263
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All DBs
Position
LG3:2045018..2049697
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AA seq
292 aa
AA seq
DB search
MASSLDISLDDRIKNNKSIRGRGGGRGRGKALSGRGSGTVGGGRRTGAVNGRRVTGNGGR
TTGAVRRGPLMVNTRPSSYAIAKSIRRTKAFPWQSDLFEDSLRAAGIQGVELDTKLYVSN
LDRGVTNEDIRELFSELGELKRYAVHYDKNGNPTGSAEVVYNRRSDAFAALKRYNNVLLD
GKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMTPRGGRGGGAAVLNRGAGWGRRGG
SRGGSGNVRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcattggatatttcacttgatgatagaattaagaacaacaagagtatccga
ggcagaggaggaggtagaggacgtggcaaagccctttctggccgtggaagtgggactgta
ggtggtggaagaaggactggtgctgttaatgggagaagagtgactggtaatggtggaaga
acaactggtgctgttcgtagaggcccacttatggtcaacactcgcccatcatcttatgct
attgccaagtctattcgcagaaccaaggcttttccatggcagagcgatttgtttgaggat
agccttagagctgcaggaatacaaggagtagaacttgacacaaagttgtatgtttcaaac
ttagaccgaggagttaccaatgaagacatacgggaacttttctccgagcttggggagttg
aagcgctatgctgttcattatgataagaatggaaacccaaccggttcggctgaagttgtc
tataatagaagaagtgatgcatttgctgctctcaaacggtataacaatgtgcttttggat
ggaaagcccatgaagattgagattgttggaacaaattctgaattgcctgtaactgcacgg
gttaatgtctctgcgatgaatggacagagaaagaggacagttgtaatgacgcctagaggc
ggaagaggtggaggtgctgctgtgctaaatcgtggtgctggctggggacgccgtggtggc
tcaaggggtggtagtggtaacgtgcgtggcagaggccgaggccgccctggcaggggtgga
ggtcgtggtcgtggaagaaaggatggagttgagaagtcagctgagcaacttgacaaggaa
ctagagacctatcatgcagaggctatgaacatctcatga
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