KEGG   Trifolium pratense (red clover): 123918319
Entry
123918319         CDS       T08949                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
  KO
K03131  transcription initiation factor TFIID subunit 6
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    123918319
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpra03021]
    123918319
   03036 Chromosome and associated proteins [BR:tpra03036]
    123918319
Transcription machinery [BR:tpra03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     123918319
   Coactivators
    SAGA/TFTC/STAGA complex
     123918319
Chromosome and associated proteins [BR:tpra03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     123918319
    STAGA complex
     123918319
    TFTC complex
     123918319
    SAGA complex
     123918319
    SLIK complex
     123918319
SSDB
Motif
Pfam: TAF6_C TAF TFIID-31kDa CBFD_NFYB_HMF Histone
Other DBs
NCBI-GeneID: 123918319
NCBI-ProteinID: XP_045826282
LinkDB
Position
LG3:complement(44221436..44226738)
AA seq 510 aa
MSVIPKETIEVIAQTIGITNLSSDVALALAPDLEYRIREIMQESIKCMRHGMRTFLTADD
VDAALALRNLEPIYGFASNDPPRFKRAPGHKDLFYIDDKDVDIKDLVEAPLPKAPLDTSI
TSHWLAIEGVQPAIPENAPFEASSEIRQIDYKDDALPVDVKLPVKHIITTELQLYYEKII
ELILNKPGSIPFRRALVTLATDSGLHPLVPYFTRFVADEVARNLNNLNILSALMRLVRSL
LRNPHIHIELYLHQLMPPIITCIIAKRIGNRLSDNHWELRDFSANLVALICKRFGHMYHN
LQPRVTKTFLHSFLDPTKALPQHYGAIKGITALGSRLVRLLILPNLEPYMHLLEPEMQLE
KQKNEIKRQEAWQVYGALLCAVGQNMHEKVKRFSSLLPPPTRATSIGNGKAMVAMPGVTG
TMVPMNSMSVDNMQGSTSGYSPMMGVSNSNAGMSSTMGRQLSKEYNTSSSILAQAWKDDI
DAGQLLPPVFELFGESLLSFIPKPESYVFL
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgagtgtgattccaaaagaaacaattgaagttattgcacaaaccattggcatcactaat
ttatcttccgatgttgcccttgctcttgcacccgatcttgaatatcgcattcgtgaaata
atgcaggaatcgattaaatgtatgcgtcatggaatgagaacttttcttactgctgatgat
gttgatgctgcacttgcattgagaaatttagagccgatatatggttttgcctctaatgat
cctccgcggttcaaaagagctcctgggcacaaggatttgttctacattgatgacaaggat
gtggatattaaagatctggttgaagctcctttaccaaaagcaccccttgatacatcaatt
accagtcattggttggctattgaaggtgtgcagcctgcaattcctgaaaatgctccattt
gaagcctcctctgagataagacaaattgactataaggatgatgcgcttcctgttgatgtc
aaattaccagttaaacatataataacgacggagcttcagctttactacgaaaaaataatt
gagctgattttgaataagcctggctccattccttttagaagagcattggttaccttggca
actgactcaggactccatcctttagttccttattttacacgctttgttgctgatgaggtg
gcaaggaatttaaataatttaaatattttatctgccttgatgcgccttgtgcggagcctt
ttgcgaaatcctcacatacatatagaactttatttacaccaattgatgccgcctatcatt
acttgcattattgcaaaaaggattggaaacagactgtctgataatcactgggagcttagg
gactttagtgctaatcttgtggctttgatatgcaaaagatttgggcatatgtatcacaat
cttcagccgcgtgtgacaaagacatttcttcattctttcttggatcctacaaaagctcta
cctcaacactatggtgcaattaaaggaataacagctcttggatcaagactggttcgcttg
cttatacttccaaatctcgagccatatatgcatcttcttgagccagaaatgcaacttgag
aagcaaaaaaatgaaataaaaaggcaagaagcatggcaagtctacggagccttgctgtgt
gcagtaggccaaaatatgcatgaaaaggtcaaaagattcagcagtttgcttccccctcca
actcgtgctacttcaattggcaatggaaaagccatggttgcaatgccaggtgttactggg
actatggtaccaatgaattccatgtcagttgacaacatgcaagggtcaacaagtggatat
tcccccatgatgggagtttctaattcaaacgccggcatgtcatcaacaatgggtcgtcaa
ctatccaaagaatacaacacttcctcttccattctagctcaggcttggaaggatgacata
gatgcaggacaattgctgccaccagtgtttgaattatttggcgagagtctgttatcattt
ataccaaaacctgaatcatatgtatttttgtaa

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